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Ccser1 Gene Detail
Summary
  • Symbol
    Ccser1
  • Name
    coiled-coil serine rich 1
  • Synonyms
    6230405M12Rik, C130092O11Rik, Fam190a
  • Feature Type
    protein coding gene
  • IDs
    MGI:3045354
    NCBI Gene: 232035
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:61157308-62359849 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 29.24 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    34285 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3045354
 protein coding gene Chr6:61156942-62359849 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030826
 protein coding gene Chr6:60929115-62201216 (+)
A/J MGP_AJ_G0030793
 protein coding gene Chr6:58268185-59455796 (+)
AKR/J MGP_AKRJ_G0030721
 protein coding gene Chr6:60197013-61404957 (+)
BALB/cJ MGP_BALBcJ_G0030804
 protein coding gene Chr6:58674897-59881680 (+)
C3H/HeJ MGP_C3HHeJ_G0030519
 protein coding gene Chr6:60229933-61486783 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031262
 protein coding gene Chr6:62325648-63607790 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028454
 protein coding gene Chr6:55813926-56943096 (+)
CAST/EiJ MGP_CASTEiJ_G0029916
 protein coding gene Chr6:60306845-61557096 (+)
CBA/J MGP_CBAJ_G0030491
 protein coding gene Chr6:64869523-66246863 (+)
DBA/2J MGP_DBA2J_G0030643
 protein coding gene Chr6:57994004-59183302 (+)
FVB/NJ MGP_FVBNJ_G0030596
 protein coding gene Chr6:57543389-58734960 (+)
LP/J MGP_LPJ_G0030727
 protein coding gene Chr6:60881031-62136570 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030631
 protein coding gene Chr6:67831667-69500604 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031288
 protein coding gene Chr6:60096622-61312313 (+)
PWK/PhJ MGP_PWKPhJ_G0029631
 protein coding gene Chr6:57166264-58360864 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029459
 protein coding gene Chr6:59559562-60794737 (+)
WSB/EiJ MGP_WSBEiJ_G0029998
 protein coding gene Chr6:60392849-61640046 (+)



Homology
more
  • Human Ortholog
    CCSER1, coiled-coil serine rich protein 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCSER1, coiled-coil serine rich protein 1
  • Synonyms
    FAM190A
  • Links
    NCBI Gene ID: 401145
    neXtProt AC: NX_Q9C0I3
    UniProt: Q9C0I3

  • Chr Location
    4q22.1; chr4:90127394-91605295 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human CCSER1 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    38 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    854
  • Tissues
    20
  • cDNA Data
    24
  • Literature Summary
    2
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039578 Ensembl Gene Model | MGI Sequence Detail 1202542 C57BL/6J ±  kb
transcript ENSMUST00000126214 Ensembl | MGI Sequence Detail 5657 Not Applicable  
polypeptide ENSMUSP00000122894 Ensembl | MGI Sequence Detail 895 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000031312 serine-rich coiled-coil domain-containing protein 1
    (term hierarchy)
  • InterPro Domains
    IPR029627 Serine-rich coiled-coil domain-containing protein
  • GlyGen
    Q8C0C4 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 3
Other
Accession IDs
less
MGI:3045349
References
more
  • Summaries
    All 59
    Developmental Gene Expression 2
    Phenotypes 38
  • Earliest
    J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5
  • Latest
    J:348679 Gradwell MA, et al., Multimodal sensory control of motor performance by glycinergic interneurons of the mouse spinal cord deep dorsal horn. Neuron. 2024 Mar 4;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory