Otx2os1 MGI Mouse Gene Detail - MGI:3583292 - orthodenticle homeobox 2 opposite strand 1

Sequence Map

Chr14:48906745-49030805 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3583292	lncRNA gene	Chr14:48906165-49109098 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005542	lincRNA gene	Chr14:42531523-42665256 (+)
A/J	MGP_AJ_G0005528	lincRNA gene	Chr14:41202614-41330688 (+)
AKR/J	MGP_AKRJ_G0005507	lincRNA gene	Chr14:42808765-42948490 (+)
BALB/cJ	MGP_BALBcJ_G0005510	lincRNA gene	Chr14:41253949-41382420 (+)
C3H/HeJ	MGP_C3HHeJ_G0005457	lincRNA gene	Chr14:42593566-42733363 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005666	lincRNA gene	Chr14:44291754-44436359 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005035	lincRNA gene	Chr14:40519206-40643711 (+)
CAST/EiJ	MGP_CASTEiJ_G0005399	lincRNA gene	Chr14:39734365-39865712 (+)
CBA/J	MGP_CBAJ_G0005446	lincRNA gene	Chr14:45713169-45855062 (+)
DBA/2J	MGP_DBA2J_G0005462	lincRNA gene	Chr14:41083619-41207809 (+)
FVB/NJ	MGP_FVBNJ_G0005488	lincRNA gene	Chr14:40824536-40951174 (+)
LP/J	MGP_LPJ_G0005546	lincRNA gene	Chr14:42778862-42921992 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005472	lincRNA gene	Chr14:45022869-45167303 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005665	lincRNA gene	Chr14:42348524-42482360 (+)
PWK/PhJ	MGP_PWKPhJ_G0005350	lincRNA gene	Chr14:37979846-38107602 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005268	lincRNA gene	Chr14:38483465-38605903 (+)
WSB/EiJ	MGP_WSBEiJ_G0005449	lincRNA gene	Chr14:42456000-42589707 (+)

Vertebrate Orthology Source

Alliance of Genome Resources

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	606497	NCBI Gene Model \| MGI Sequence Detail	124061	C57BL/6J	± kb
	transcript	NR_029384	RefSeq \| MGI Sequence Detail	743	C57BL/6

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Summaries

All 12

Developmental Gene Expression 1

Phenotypes 5
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Latest

J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Otx2os1:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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