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Rdh16f2 Gene Detail
Summary
  • Symbol
    Rdh16f2
  • Name
    RDH16 family member 2
  • Synonyms
    BC089597
  • Feature Type
    protein coding gene
  • IDs
    MGI:3583955
    NCBI Gene: 216454
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:127702345-127713188 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 76.39 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    378 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3583955
 protein coding gene Chr10:127702343-127713188 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017840
 protein coding gene Chr10:131512637-131529270 (+)
A/J MGP_AJ_G0017815
 protein coding gene Chr10:126266677-126276255 (+)
AKR/J MGP_AKRJ_G0017778
 protein coding gene Chr10:129976807-129986371 (+)
BALB/cJ MGP_BALBcJ_G0017779
 protein coding gene Chr10:126649989-126659515 (+)
C3H/HeJ MGP_C3HHeJ_G0017603
 protein coding gene Chr10:130116914-130126980 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018234
 protein coding gene Chr10:135968872-135979541 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0017163
 protein coding gene Chr10:130817146-130833241 (+)
CBA/J MGP_CBAJ_G0017572
 protein coding gene Chr10:141498672-141513373 (+)
DBA/2J MGP_DBA2J_G0017678
 protein coding gene Chr10:125341127-125350586 (+)
FVB/NJ MGP_FVBNJ_G0017673
 protein coding gene Chr10:124276713-124286608 (+)
LP/J MGP_LPJ_G0017752
 protein coding gene Chr10:132132392-132144253 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017701
 protein coding gene Chr10:144120161-144130254 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018274
 protein coding gene Chr10:130064433-130078417 (+)
PWK/PhJ MGP_PWKPhJ_G0016948
 protein coding gene Chr10:125565518-125576076 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016738
 protein coding gene Chr10:129092070-129102376 (+)
WSB/EiJ MGP_WSBEiJ_G0017222
 protein coding gene Chr10:130292155-130302209 (+)



Homology
more
  • Human Ortholog
    RDH16, retinol dehydrogenase 16
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RDH16, retinol dehydrogenase 16
  • Synonyms
    hRDH-E, RODH-4, RODH4, SDR9C8
  • Links
    NCBI Gene ID: 8608
    neXtProt AC: NX_O75452
    UniProt: O75452

  • Chr Location
    12q13.3; chr12:56951431-56959374 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    15
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    751
  • Tissues
    45
  • cDNA Data
    26
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 216454 NCBI Gene Model | MGI Sequence Detail 10844 C57BL/6J ±  kb
transcript NM_145424 RefSeq | MGI Sequence Detail 1281 C57BL/6  
polypeptide NP_663399 RefSeq | MGI Sequence Detail 318 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR036291 NAD(P)-binding domain superfamily
    IPR020904 Short-chain dehydrogenase/reductase, conserved site
    IPR002347 Short-chain dehydrogenase/reductase SDR
Molecular
Reagents
less
  • All nucleic 26
    cDNA 26

    Microarray probesets 2
References
more
  • Summaries
    All 25
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory