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Igkv9-123 Gene Detail
Summary
  • Symbol
    Igkv9-123
  • Name
    immunoglobulin kappa variable 9-123
  • Feature Type
    gene segment
  • IDs
    MGI:3643848
    NCBI Gene: 628144
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:67931214-67931674 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 31.02 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    131 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3643848
 gene segment Chr6:67931212-67931698 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000117
 gene segment Chr6:68064292-68064778 (-)
A/J MGP_AJ_G0000110
 gene segment Chr6:65147923-65148409 (-)
AKR/J MGP_AKRJ_G0000117
 gene segment Chr6:67178962-67179448 (-)
BALB/cJ MGP_BALBcJ_G0000105
 gene segment Chr6:65522157-65522643 (-)
C3H/HeJ MGP_C3HHeJ_G0000146
 gene segment Chr6:117005564-117006050 (+)
C57BL/6NJ MGP_C57BL6NJ_G0000156
 gene segment Chr6:69686449-69686935 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0000119
 gene segment Chr6:67455415-67455901 (-)
CBA/J MGP_CBAJ_G0000109
 gene segment Chr6:72531905-72532391 (-)
DBA/2J MGP_DBA2J_G0000105
 gene segment Chr6:64824581-64825067 (-)
FVB/NJ MGP_FVBNJ_G0000104
 gene segment Chr6:64263353-64263839 (-)
LP/J MGP_LPJ_G0000121
 gene segment Chr6:67956553-67957039 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000119
 gene segment Chr6:76297605-76298091 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000141
 gene segment Chr6:67169857-67170343 (-)
PWK/PhJ MGP_PWKPhJ_G0000103
 gene segment Chr6:63732912-63733398 (-)
SPRET/EiJ MGP_SPRETEiJ_G0000079
 gene segment Chr6:66647592-66648078 (+)
WSB/EiJ MGP_WSBEiJ_G0000116
 gene segment Chr6:67366902-67367388 (-)



Homology
more
  • Human Ortholog
    IGKV1-13, immunoglobulin kappa variable 1-13
  • Vertebrate Orthologs
    15
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGKV1-13, immunoglobulin kappa variable 1-13
  • Synonyms
    IGKV113, L18
  • Links
    NCBI Gene ID: 28939
    UniProt: P0DP09

  • Chr Location
    2p11.2; chr2:89045990-89046466 (-)  GRCh38
  • Human Ortholog
    IGKV1-16, immunoglobulin kappa variable 1-16
  • Synonyms
    IGKV116, L1
  • Links
    NCBI Gene ID: 28938
    UniProt: P04430

  • Chr Location
    2p11.2; chr2:89099859-89100361 (-)  GRCh38
  • Human Ortholog
    IGKV1-17, immunoglobulin kappa variable 1-17
  • Synonyms
    A30, IGKV117
  • Links
    NCBI Gene ID: 28937
    UniProt: P01599

  • Chr Location
    2p11.2; chr2:89117342-89117844 (-)  GRCh38
  • Human Ortholog
    IGKV1-33, immunoglobulin kappa variable 1-33
  • Synonyms
    IGKV133, O18
  • Links
    NCBI Gene ID: 28933

  • Chr Location
    2p11.2; chr2:89268001-89268506 (-)  GRCh38
  • Human Ortholog
    IGKV1-5, immunoglobulin kappa variable 1-5
  • Synonyms
    IGKV, IGKV15, L12, L12a, V1
  • Links
    NCBI Gene ID: 28299
    UniProt: P01602

  • Chr Location
    2p11.2; chr2:88947301-88947957 (-)  GRCh38
  • Human Ortholog
    IGKV1-6, immunoglobulin kappa variable 1-6
  • Synonyms
    IGKV16, L11
  • Links
    NCBI Gene ID: 28943
    UniProt: A0A0C4DH72

  • Chr Location
    2p11.2; chr2:88966262-88966767 (-)  GRCh38
  • Human Ortholog
    IGKV1-9, immunoglobulin kappa variable 1-9
  • Synonyms
    IGKV19, L8
  • Links
    NCBI Gene ID: 28941
    UniProt: A0A0C4DH69

  • Chr Location
    2p11.2; chr2:89009982-89010515 (-)  GRCh38
  • Human Ortholog
    IGKV1D-13, immunoglobulin kappa variable 1D-13
  • Synonyms
    IGKV1D13, L18
  • Links
    NCBI Gene ID: 28902
    UniProt: A0A0B4J2D9

  • Chr Location
    2p11.2; chr2:90154073-90154574 (+)  GRCh38
  • Human Ortholog
    IGKV1D-17, immunoglobulin kappa variable 1D-17
  • Synonyms
    IGKV1D17, L14
  • Links
    NCBI Gene ID: 28900
    UniProt: A0A075B6S4

  • Chr Location
    2p11.2; chr2:90082635-90083291 (+)  GRCh38
  • Human Ortholog
    IGKV1D-33, immunoglobulin kappa variable 1D-33
  • Synonyms
    IGKV1D33, O8
  • Links
    NCBI Gene ID: 28896
    UniProt: P01593

  • Chr Location
    2p11.2; chr2:89913982-89914545 (+)  GRCh38
  • Human Ortholog
    IGKV1OR2-108, immunoglobulin kappa variable 1/OR2-108 (non-functional)
  • Synonyms
    IGKV1OR2108, IGO1
  • Links
    NCBI Gene ID: 28862

  • Chr Location
    2q12-q14; chr2:113406396-113406872 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 628144 NCBI Gene Model | MGI Sequence Detail 461 C57BL/6J ±  kb
polypeptide A0A140T8N8 UniProt | EBI | MGI Sequence Detail 117 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR003599 Immunoglobulin subtype
    IPR050150 Immunoglobulin Variable Light Chain
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 8
    Gene Ontology 1
  • Earliest
    J:44714 Ulrich HD, et al., Germline diversity within the mouse Igk-V9 gene family. Immunogenetics. 1997;47(1):91-5
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory