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Trav7n-5 Gene Detail
Summary
  • Symbol
    Trav7n-5
  • Name
    T cell receptor alpha variable 7N-5
  • Feature Type
    gene segment
  • IDs
    MGI:3644782
    NCBI Gene: 667635
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:53384379-53384905 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.24 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    41 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644782
 gene segment Chr14:53384376-53384905 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002533
 gene segment Chr14:46861125-46861655 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002490
 gene segment Chr14:47329379-47329909 (+)
BALB/cJ MGP_BALBcJ_G0002497
 gene segment Chr14:45777517-45778047 (+)
C3H/HeJ MGP_C3HHeJ_G0002473
 gene segment Chr14:47118150-47118680 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002622
 gene segment Chr14:48987533-48988062 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002447
 gene segment Chr14:44139109-44139639 (+)
CBA/J MGP_CBAJ_G0002465
 gene segment Chr14:50480502-50481032 (+)
DBA/2J MGP_DBA2J_G0002475
 gene segment Chr14:45423755-45424285 (+)
FVB/NJ MGP_FVBNJ_G0002488
 gene segment Chr14:44998830-44999360 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0002624
 gene segment Chr14:46664233-46664763 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002347
 gene segment Chr14:42669364-42669894 (+)
WSB/EiJ MGP_WSBEiJ_G0002476
 gene segment Chr14:47013885-47014415 (+)



Homology
more
  • Human Ortholog
    TRAV12-1, T cell receptor alpha variable 12-1
  • Vertebrate Orthologs
    9
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV12-1, T cell receptor alpha variable 12-1
  • Synonyms
    TCRAV12S1, TCRAV2S3, TRAV121
  • Links
    NCBI Gene ID: 28674
    UniProt: A0A0B4J245

  • Chr Location
    14q11.2; chr14:21841240-21841774 (+)  GRCh38
  • Human Ortholog
    TRAV12-2, T cell receptor alpha variable 12-2
  • Synonyms
    TCRAV12S2, TCRAV2S1, TRAV122
  • Links
    NCBI Gene ID: 28673
    UniProt: A0A075B6T6

  • Chr Location
    14q11.2; chr14:21887857-21888502 (+)  GRCh38
  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Synonyms
    TCRAV12S3, TCRAV2S2, TRAV123
  • Links
    NCBI Gene ID: 28672
    UniProt: A0A0B4J271

  • Chr Location
    14q11.2; chr14:21965451-21966061 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 667635 NCBI Gene Model | MGI Sequence Detail 527 C57BL/6J ±  kb
transcript BC064122 GenBank | ENA | DDBJ | MGI Sequence Detail 2068 C57BL/6  
polypeptide A0A075B604 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051006 T cell receptor variable domain
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory