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Slc10a4-ps Pseudogene Detail
Summary
  • Symbol
    Slc10a4-ps
  • Name
    solute carrier family 10 (sodium/bile acid cotransporter family), pseudogene
  • Synonyms
    Gm5868, Slc10a4l
Location &
Maps
more
  • Sequence Map
    Chr5:72738981-72744893 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 38.44 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    244 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645333
 pseudogene Chr5:72738981-72744894 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029621
 protein coding gene Chr5:72983641-72992250 (+)
A/J MGP_AJ_G0029589
 protein coding gene Chr5:70247847-70264205 (+)
AKR/J MGP_AKRJ_G0029537
 protein coding gene Chr5:72513173-72519416 (+)
BALB/cJ MGP_BALBcJ_G0029597
 protein coding gene Chr5:70962142-70972623 (+)
C3H/HeJ MGP_C3HHeJ_G0029314
 protein coding gene Chr5:72391295-72418222 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030052
 protein coding gene Chr5:75970942-76001769 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027285
 protein coding gene Chr5:65523914-65528804 (-)
CAST/EiJ MGP_CASTEiJ_G0028723
 protein coding gene Chr5:71520889-71526661 (-)
CBA/J MGP_CBAJ_G0029290
 protein coding gene Chr5:78444453-78454751 (+)
DBA/2J MGP_DBA2J_G0029429
 protein coding gene Chr5:69842723-69848792 (-)
FVB/NJ MGP_FVBNJ_G0029396
 protein coding gene Chr5:69469966-69477762 (+)
LP/J MGP_LPJ_G0029520
 protein coding gene Chr5:73420053-73427500 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0030077
 protein coding gene Chr5:71615820-71631696 (-)
PWK/PhJ MGP_PWKPhJ_G0028445
 protein coding gene Chr5:68809514-68818595 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028286
 protein coding gene Chr5:71399511-71430669 (+)
WSB/EiJ MGP_WSBEiJ_G0028802
 protein coding gene Chr5:71870957-71886018 (-)



Homology
more
  • Human Ortholog
    SLC10A4, solute carrier family 10 member 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC10A4, solute carrier family 10 member 4
  • Synonyms
    P4
  • Links
    NCBI Gene ID: 201780
    neXtProt AC: NX_Q96EP9
    UniProt: Q96EP9

  • Chr Location
    4p11; chr4:48483343-48489526 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    18 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Slc10a4-ps
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    3 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 545758 NCBI Gene Model | MGI Sequence Detail 5913 C57BL/6J ±  kb
transcript NR_163693 RefSeq | MGI Sequence Detail 1381 C57BL/6  
polypeptide Q8BJG1 UniProt | EBI | MGI Sequence Detail 145 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR004710 Bile acid:sodium symporter
    IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3
    IPR038770 Sodium/solute symporter superfamily
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGI:6330779, MGI:6436712
References
more
  • Summaries
    All 26
    Gene Ontology 1
    Phenotypes 18
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory