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Ighv5-12-4 Gene Detail
Summary
  • Symbol
    Ighv5-12-4
  • Name
    immunoglobulin heavy variable 5-12-4
  • Feature Type
    gene segment
  • IDs
    MGI:3645977
    NCBI Gene: 628098
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr12:113725871-113726164 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 62.18 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    292 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645977
 gene segment Chr12:113725869-113726328 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0000048
 gene segment Chr12:111859146-111859452 (-)
AKR/J MGP_AKRJ_G0000048
 gene segment Chr12:115228112-115228571 (-)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0000043
 gene segment Chr12:115662291-115662750 (-)
C57BL/6NJ MGP_C57BL6NJ_G0000061
 gene segment Chr12:119937140-119937599 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000034
 gene segment Chr12:108383739-108384196 (-)
CAST/EiJ MGP_CASTEiJ_G0000051
 gene segment Chr12:110451381-110477239 (-)
CBA/J MGP_CBAJ_G0000043
 gene segment Chr12:124580577-124581036 (-)
DBA/2J MGP_DBA2J_G0000049
 gene segment Chr12:111305266-111305725 (-)
FVB/NJ MGP_FVBNJ_G0000046
 gene segment Chr12:110165366-110165825 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0000050
 gene segment Chr12:127660043-127660502 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000059
 gene segment Chr12:114619064-114619523 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0000038
 gene segment Chr12:108696669-108697128 (-)
WSB/EiJ MGP_WSBEiJ_G0000052
 gene segment Chr12:115624819-115625278 (-)



Homology
more
  • Human Ortholog
    IGHV3-13, immunoglobulin heavy variable 3-13
  • Vertebrate Orthologs
    20
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGHV3-13, immunoglobulin heavy variable 3-13
  • Synonyms
    IGHV313
  • Links
    NCBI Gene ID: 28449
    UniProt: P01766

  • Chr Location
    14q32.33; chr14:106129540-106130072 (-)  GRCh38
  • Human Ortholog
    IGHV3-20, immunoglobulin heavy variable 3-20
  • Synonyms
    IGHV320, VH
  • Links
    NCBI Gene ID: 28445
    UniProt: A0A0C4DH32

  • Chr Location
    14q32.33; chr14:106210936-106211453 (-)  GRCh38
  • Human Ortholog
    IGHV3-23, immunoglobulin heavy variable 3-23
  • Synonyms
    DP47, IGHV323, V3-23, VH26
  • Links
    NCBI Gene ID: 28442
    UniProt: P01764

  • Chr Location
    14q32.33; chr14:106268606-106269140 (-)  GRCh38
  • Human Ortholog
    IGHV3-30, immunoglobulin heavy variable 3-30
  • Synonyms
    IGHV330, VH
  • Links
    NCBI Gene ID: 28439
    UniProt: P01768

  • Chr Location
    14q32.33; chr14:106335080-106335613 (-)  GRCh38
  • Human Ortholog
    IGHV3-30-3, immunoglobulin heavy variable 3-30-3
  • Synonyms
    IGHV3-3, IGHV3303
  • Links
    NCBI Gene ID: 57290
    UniProt: P0DP02

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV3-30-5, immunoglobulin heavy variable 3-30-5
  • Synonyms
    IGHV3-3, IGHV3305
  • Links
    NCBI Gene ID: 89770
    UniProt: P0DP03

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV3-33, immunoglobulin heavy variable 3-33
  • Synonyms
    IGHV333, VH
  • Links
    NCBI Gene ID: 28434
    UniProt: P01772

  • Chr Location
    14q32.33; chr14:106359791-106360324 (-)  GRCh38
  • Human Ortholog
    IGHV3-35, immunoglobulin heavy variable 3-35 (non-functional)
  • Synonyms
    IGHV335, VH
  • Links
    NCBI Gene ID: 28432
    UniProt: A0A0C4DH35

  • Chr Location
    14q32.33; chr14:106389390-106389858 (-)  GRCh38
  • Human Ortholog
    IGHV3-38, immunoglobulin heavy variable 3-38 (non-functional)
  • Synonyms
    IGHV338, VH
  • Links
    NCBI Gene ID: 28429
    UniProt: A0A0C4DH36

  • Chr Location
    14q32.33; chr14:106410493-106411021 (-)  GRCh38
  • Human Ortholog
    IGHV3-38-3, immunoglobulin heavy variable 3-38-3 (non-functional)
  • Synonyms
    IGH, IGHV3-D, IGHV3D
  • Links
    NCBI Gene ID: 28404
    UniProt: P0DTE1

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV3-43, immunoglobulin heavy variable 3-43
  • Synonyms
    IGHV343, VH
  • Links
    NCBI Gene ID: 28426
    UniProt: A0A0B4J1X8

  • Chr Location
    14q32.33; chr14:106470263-106470800 (-)  GRCh38
  • Human Ortholog
    IGHV3-53, immunoglobulin heavy variable 3-53
  • Synonyms
    IGHV353, VH
  • Links
    NCBI Gene ID: 28420
    UniProt: P01767

  • Chr Location
    14q32.33; chr14:106592676-106593347 (-)  GRCh38
  • Human Ortholog
    IGHV3-64, immunoglobulin heavy variable 3-64
  • Synonyms
    IGHV364, VH
  • Links
    NCBI Gene ID: 28414
    UniProt: A0A075B6Q5

  • Chr Location
    14q32.33; chr14:106657723-106658258 (-)  GRCh38
  • Human Ortholog
    IGHV3-64D, immunoglobulin heavy variable 3-64D
  • Links
    NCBI Gene ID: 102723170
    UniProt: A0A0J9YX35

  • Chr Location
    14q32.33; chr14:106088122-106088573 (-)  GRCh38
  • Human Ortholog
    IGHV3-66, immunoglobulin heavy variable 3-66
  • Synonyms
    IGHV366, VH
  • Links
    NCBI Gene ID: 28412
    UniProt: A0A0C4DH42

  • Chr Location
    14q32.33; chr14:106675015-106675544 (-)  GRCh38
  • Human Ortholog
    IGHV3-74, immunoglobulin heavy variable 3-74
  • Synonyms
    IGHV374, VH
  • Links
    NCBI Gene ID: 28408
    UniProt: A0A0B4J1X5

  • Chr Location
    14q32.33; chr14:106810440-106811131 (-)  GRCh38
  • Human Ortholog
    IGHV3-9, immunoglobulin heavy variable 3-9
  • Synonyms
    IGHV39, VH
  • Links
    NCBI Gene ID: 28451
    UniProt: P01782

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV3OR16-10, immunoglobulin heavy variable 3/OR16-10 (non-functional)
  • Synonyms
    IGHV3OR1610
  • Links
    NCBI Gene ID: 28306

  • Chr Location
    16p11.2; chr16:32995048-32995505 (+)  GRCh38
  • Human Ortholog
    IGHV3OR16-8, immunoglobulin heavy variable 3/OR16-8 (non-functional)
  • Synonyms
    IGHV3/OR16-8, IGHV3OR168
  • Links
    NCBI Gene ID: 388255

  • Chr Location
    16p11.2
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 628098 NCBI Gene Model | MGI Sequence Detail 294 C57BL/6J ±  kb
polypeptide A0A0A6YWG4 UniProt | EBI | MGI Sequence Detail 117 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR050199 Immunoglobulin Heavy Variable
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 7
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory