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Cdv3-ps Pseudogene Detail
Summary
  • Symbol
    Cdv3-ps
  • Name
    Cdv3 retrotransposed pseudogene
  • Synonyms
    Gm7236
Location &
Maps
more
  • Sequence Map
    Chr14:42978394-42979928 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 22.47 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    85 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646628
 pseudogene Chr14:42978301-42983468 (-)
129S1/SvImJ MGP_129S1SvImJ_G0011934
 pseudogene Chr2:160281887-160282201 (-)
A/J MGP_AJ_G0011928
 pseudogene Chr2:153914018-153914332 (-)
AKR/J MGP_AKRJ_G0011894
 pseudogene Chr2:158380374-158380688 (-)
BALB/cJ MGP_BALBcJ_G0011905
 pseudogene Chr2:154212835-154213149 (-)
C3H/HeJ MGP_C3HHeJ_G0011785
 pseudogene Chr2:158735017-158735331 (-)
C57BL/6NJ MGP_C57BL6NJ_G0012206
 pseudogene Chr2:164987479-164987794 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0011572
 pseudogene Chr2:159045059-159045373 (-)
CBA/J MGP_CBAJ_G0011761
 pseudogene Chr2:170982410-170982724 (-)
DBA/2J MGP_DBA2J_G0011813
 pseudogene Chr2:153095635-153095949 (-)
FVB/NJ MGP_FVBNJ_G0011820
 pseudogene Chr2:151473303-151473617 (-)
LP/J MGP_LPJ_G0014197
 pseudogene Chr9:105174856-105175990 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0011819
 pseudogene Chr2:174977532-174977846 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0012205
 pseudogene Chr2:158268122-158268436 (-)
PWK/PhJ MGP_PWKPhJ_G0011421
 pseudogene Chr2:152593911-152594225 (-)
SPRET/EiJ MGP_SPRETEiJ_G0011236
 pseudogene Chr2:157191717-157192031 (-)
WSB/EiJ MGP_WSBEiJ_G0011591
 pseudogene Chr2:159151426-159151740 (-)



Homology
more
  • Human Ortholog
    CDV3, CDV3 homolog
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDV3, CDV3 homolog
  • Synonyms
    H41
  • Links
    NCBI Gene ID: 55573
    neXtProt AC: NX_Q9UKY7
    UniProt: Q9UKY7

  • Chr Location
    3q22.1; chr3:133573686-133590274 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090389 Ensembl Gene Model | MGI Sequence Detail 1535 C57BL/6J ±  kb
transcript ENSMUST00000169632 Ensembl | MGI Sequence Detail 827 Not Applicable  
polypeptide XP_036014922 RefSeq | MGI Sequence Detail 274 C57BL/6J  
For the selected sequence
Other
Accession IDs
less
MGI:5827767
References
more
  • Summaries
    All 7
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:164563 The Gene Ontology Consortium, Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs. 2010 Oct;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory