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Trav4-2 Gene Detail
Summary
  • Symbol
    Trav4-2
  • Name
    T cell receptor alpha variable 4-2
  • Synonyms
    Gm13953
  • Feature Type
    gene segment
  • IDs
    MGI:3649605
    NCBI Gene: 100126462
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:53655845-53656330 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.36 cM
Strain
Comparison
more
  • SNPs within 2kb
    110 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649605
 gene segment Chr14:53655806-53656330 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002525
 gene segment Chr14:46754225-46754750 (+)
A/J MGP_AJ_G0002495
 gene segment Chr14:45518836-45519361 (+)
AKR/J MGP_AKRJ_G0002511
 gene segment Chr14:48005859-48006384 (+)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0002467
 gene segment Chr14:46951030-46951555 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002430
 gene segment Chr14:43895346-43895870 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0002466
 gene segment Chr14:45300289-45300813 (+)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0002451
 gene segment Chr14:49765345-49765870 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002614
 gene segment Chr14:46540537-46541062 (+)
PWK/PhJ MGP_PWKPhJ_G0002410
 gene segment Chr14:42048431-42049055 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002396
 gene segment Chr2:107704005-107704529 (-)
WSB/EiJ MGP_WSBEiJ_G0002460
 gene segment Chr14:46841660-46842185 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    18
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126462 NCBI Gene Model | MGI Sequence Detail 486 C57BL/6J ±  kb
polypeptide A0A075B638 UniProt | EBI | MGI Sequence Detail 110 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051896 T cell receptor alpha variable region
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 9
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory