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Snrpert Pseudogene Detail
Summary
  • Symbol
    Snrpert
  • Name
    small nuclear ribonucleoprotein E, pseudogene
  • Synonyms
    Gm14284
Location &
Maps
more
  • Sequence Map
    Chr2:131164008-131164286 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 63.32 cM
Strain
Comparison
more
  • SNPs within 2kb
    94 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650419
 pseudogene Chr2:131163860-131164290 (-)
129S1/SvImJ MGP_129S1SvImJ_G0011866
 pseudogene Chr2:134844843-134845121 (-)
A/J MGP_AJ_G0011856
 pseudogene Chr2:129369734-129370012 (-)
AKR/J MGP_AKRJ_G0011824
 pseudogene Chr2:133101869-133102147 (-)
BALB/cJ MGP_BALBcJ_G0011835
 pseudogene Chr2:129757130-129757408 (-)
C3H/HeJ MGP_C3HHeJ_G0011717
 pseudogene Chr2:133541624-133541902 (-)
C57BL/6NJ MGP_C57BL6NJ_G0012137
 pseudogene Chr2:138977595-138977873 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0012041
 pseudogene Chr6:122686630-122686908 (+)
CAST/EiJ MGP_CASTEiJ_G0011507
 pseudogene Chr2:133822811-133823089 (-)
CBA/J MGP_CBAJ_G0011692
 pseudogene Chr2:144154843-144155121 (-)
DBA/2J MGP_DBA2J_G0011748
 pseudogene Chr2:128758334-128758612 (-)
FVB/NJ MGP_FVBNJ_G0011751
 pseudogene Chr2:127389724-127390002 (-)
LP/J MGP_LPJ_G0011814
 pseudogene Chr2:135073566-135073844 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0011756
 pseudogene Chr2:147983800-147984078 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0012133
 pseudogene Chr2:133075948-133076226 (-)
PWK/PhJ MGP_PWKPhJ_G0011354
 pseudogene Chr2:128333623-128333979 (-)
SPRET/EiJ MGP_SPRETEiJ_G0012788
 pseudogene Chr6:126932872-126933149 (+)
WSB/EiJ MGP_WSBEiJ_G0011526
 pseudogene Chr2:133982859-133983137 (-)



Homology
more
  • Human Ortholog
    SNRPE, small nuclear ribonucleoprotein polypeptide E
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNRPE, small nuclear ribonucleoprotein polypeptide E
  • Synonyms
    HYPT11, Sm-E, SME, snRNP-E
  • Links
    NCBI Gene ID: 6635
    neXtProt AC: NX_P62304
    UniProt: P62304

  • Chr Location
    1q32.1; chr1:203861599-203871152 (+)  GRCh38
Human Diseases
more
  • Diseases
    4 with human SNRPE associations

Human Disease Mouse Models
      
IDs
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Snrpert
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    18
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082044 Ensembl Gene Model | MGI Sequence Detail 279 C57BL/6J ±  kb
transcript ENSMUST00000121967 Ensembl | MGI Sequence Detail 279 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 9
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory