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Cstdc5 Gene Detail
Summary
  • Symbol
    Cstdc5
  • Name
    cystatin domain containing 5
  • Synonyms
    BC100530
  • Feature Type
    protein coding gene
  • IDs
    MGI:3696883
    NCBI Gene: 100034684
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:36179744-36187932 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 25.50 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    251 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3696883
 protein coding gene Chr16:36179744-36188110 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0022751
 protein coding gene Chr16:33014820-33025224 (-)
AKR/J MGP_AKRJ_G0022720
 protein coding gene Chr16:34078818-34126698 (+)
BALB/cJ MGP_BALBcJ_G0022750
 protein coding gene Chr16:33131943-33140643 (-)
C3H/HeJ MGP_C3HHeJ_G0022514
 protein coding gene Chr16:34250984-34302504 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023198
 protein coding gene Chr16:35448036-35466000 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021960
 protein coding gene Chr17:86238959-86242186 (-)
CAST/EiJ MGP_CASTEiJ_G0022040
 protein coding gene Chr16:34414068-34417504 (+)
CBA/J MGP_CBAJ_G0022484
 protein coding gene Chr16:37029820-37080397 (-)
DBA/2J MGP_DBA2J_G0022617
 protein coding gene Chr16:32758824-32815694 (+)
FVB/NJ MGP_FVBNJ_G0022594
 protein coding gene Chr16:32964552-32968061 (-)
LP/J MGP_LPJ_G0022685
 protein coding gene Chr16:34413865-34424214 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022614
 protein coding gene Chr16:36128645-36178100 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023214
 protein coding gene Chr16:34189180-34242356 (-)
PWK/PhJ MGP_PWKPhJ_G0021781
 protein coding gene Chr16:33155570-33159347 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021614
 protein coding gene Chr16:33949880-33953372 (+)
WSB/EiJ MGP_WSBEiJ_G0022086
 protein coding gene Chr16:34066800-34070236 (+)



Homology
more
  • Human Ortholog
    CSTA, cystatin A
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CSTA, cystatin A
  • Synonyms
    AREI, PSS4, STF1, STFA
  • Links
    NCBI Gene ID: 1475
    neXtProt AC: NX_P01040
    UniProt: P01040

  • Chr Location
    3q21.1; chr3:122325248-122341969 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human CSTA associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    15
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100034684 NCBI Gene Model | MGI Sequence Detail 8189 C57BL/6J ±  kb
transcript NM_001082546 RefSeq | MGI Sequence Detail 453 Not Specified  
polypeptide NP_001076015 RefSeq | MGI Sequence Detail 97 Not Specified  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
Other
Accession IDs
less
MGI:6275075
References
more
  • Summaries
    All 13
    Developmental Gene Expression 1
    Gene Ontology 2
  • Earliest
    J:324116 Morita R, et al., Tracing the origin of hair follicle stem cells. Nature. 2021 Jun;594(7864):547-552
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory