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Ccl21e Gene Detail
Summary
  • Symbol
    Ccl21e
  • Name
    C-C motif chemokine ligand 21E
  • Synonyms
    Gm10591
  • Feature Type
    protein coding gene
  • IDs
    MGI:3711256
    NCBI Gene: 100504239
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr4:42612123-42613253 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 22.70 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    7
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3711256
 protein coding gene Chr4:42612121-42613253 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028187
 protein coding gene Chr4:40648336-40649001 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0028162
 protein coding gene Chr4:39322541-39323206 (+)
C3H/HeJ MGP_C3HHeJ_G0027888
 protein coding gene Chr4:40701524-40702189 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J MGP_DBA2J_G0027997
 protein coding gene Chr4:38553875-38554540 (+)
FVB/NJ MGP_FVBNJ_G0027967
 protein coding gene Chr4:38371438-38372103 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0026878
 protein coding gene Chr4:39861707-39862372 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CCL21, C-C motif chemokine ligand 21
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCL21, C-C motif chemokine ligand 21
  • Synonyms
    6Ckine, CKb9, ECL, SCYA21, SLC, TCA4
  • Links
    NCBI Gene ID: 6366
    neXtProt AC: NX_O00585
    UniProt: O00585

  • Chr Location
    9p13.3; chr9:34709005-34710136 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
  • All Mutations and Alleles
    2
  • Chemically and radiation induced
    1
  • Endonuclease-mediated
    1
  • Genomic Mutations
    1 involving Ccl21e
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    26
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 100504239 NCBI Gene Model | MGI Sequence Detail 1131 C57BL/6J ±  kb
transcript NM_001193668 RefSeq | MGI Sequence Detail 867 C57BL/6  
polypeptide NP_001180597 RefSeq | MGI Sequence Detail 133 C57BL/6  
For the selected sequence
Other
Accession IDs
less
MGI:7526401
References
more
  • Summaries
    All 9
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
  • Latest
    J:238766 Shanghai Model Organisms Center, Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China. MGI Direct Data Submission. 2017;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory