About   Help   FAQ
Ighv1-9 Gene Detail
Summary
  • Symbol
    Ighv1-9
  • Name
    immunoglobulin heavy variable V1-9
  • Synonyms
    Gm16697
  • Feature Type
    gene segment
  • IDs
    MGI:4439621
    NCBI Gene: 668478
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:114547189-114547482 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 62.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    270 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439621
 gene segment Chr12:114547189-114547622 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000076
 gene segment Chr12:117286172-117286605 (-)
A/J MGP_AJ_G0000085
 gene segment Chr12:112773969-112774402 (-)
AKR/J MGP_AKRJ_G0000081
 gene segment Chr12:116103088-116103520 (-)
BALB/cJ MGP_BALBcJ_G0000080
 gene segment Chr12:113392196-113392629 (-)
C3H/HeJ MGP_C3HHeJ_G0000082
 gene segment Chr12:116459363-116459795 (-)
C57BL/6NJ MGP_C57BL6NJ_G0000105
 gene segment Chr12:120899940-120900373 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000059
 gene segment Chr12:109092684-109093117 (-)
CAST/EiJ MGP_CASTEiJ_G0000081
 gene segment Chr12:111264190-111264623 (-)
CBA/J MGP_CBAJ_G0000080
 gene segment Chr12:125495826-125496258 (-)
DBA/2J MGP_DBA2J_G0000082
 gene segment Chr12:112349648-112350081 (-)
FVB/NJ MGP_FVBNJ_G0000076
 gene segment Chr12:111039390-111039823 (-)
LP/J MGP_LPJ_G0000087
 gene segment Chr12:117206841-117207274 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000086
 gene segment Chr12:128768680-128769113 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000095
 gene segment Chr12:115483743-115484175 (-)
PWK/PhJ MGP_PWKPhJ_G0000071
 gene segment Chr12:107004741-107005174 (-)
SPRET/EiJ MGP_SPRETEiJ_G0000064
 gene segment Chr12:109733233-109733666 (-)
WSB/EiJ MGP_WSBEiJ_G0000078
 gene segment Chr12:116495501-116495934 (-)



Homology
more
  • Human Ortholog
    IGHV1-18, immunoglobulin heavy variable 1-18
  • Vertebrate Orthologs
    16
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGHV1-18, immunoglobulin heavy variable 1-18
  • Synonyms
    IGHV118
  • Links
    NCBI Gene ID: 28468
    UniProt: A0A0C4DH31

  • Chr Location
    14q32.33; chr14:106184899-106185394 (-)  GRCh38
  • Human Ortholog
    IGHV1-2, immunoglobulin heavy variable 1-2
  • Synonyms
    IGHV12, V35
  • Links
    NCBI Gene ID: 28474

  • Chr Location
    14q32.33; chr14:105986582-105987083 (-)  GRCh38
  • Human Ortholog
    IGHV1-24, immunoglobulin heavy variable 1-24
  • Synonyms
    IGHV124, VH
  • Links
    NCBI Gene ID: 28467
    UniProt: A0A0C4DH33

  • Chr Location
    14q32.33; chr14:106276546-106277043 (-)  GRCh38
  • Human Ortholog
    IGHV1-3, immunoglobulin heavy variable 1-3
  • Synonyms
    IGHV13, VI-3B
  • Links
    NCBI Gene ID: 28473
    UniProt: A0A0C4DH29

  • Chr Location
    14q32.33; chr14:106005095-106005574 (-)  GRCh38
  • Human Ortholog
    IGHV1-38-4, immunoglobulin heavy variable 1-38-4 (non-functional)
  • Synonyms
    IGHV1-C, IGHV1C
  • Links
    NCBI Gene ID: 28460
    UniProt: P0DTW3

  • Chr Location
    14q32.33
  • Human Ortholog
    IGHV1-45, immunoglobulin heavy variable 1-45
  • Synonyms
    IGHV145, VH
  • Links
    NCBI Gene ID: 28466
    UniProt: A0A0A0MS14

  • Chr Location
    14q32.33; chr14:106506996-106507491 (-)  GRCh38
  • Human Ortholog
    IGHV1-46, immunoglobulin heavy variable 1-46
  • Synonyms
    IGHV146
  • Links
    NCBI Gene ID: 28465

  • Chr Location
    14q32.33; chr14:106511115-106511856 (-)  GRCh38
  • Human Ortholog
    IGHV1-58, immunoglobulin heavy variable 1-58
  • Synonyms
    IGHV158, VH
  • Links
    NCBI Gene ID: 28464
    UniProt: A0A0C4DH39

  • Chr Location
    14q32.33; chr14:106622357-106622855 (-)  GRCh38
  • Human Ortholog
    IGHV1-69, immunoglobulin heavy variable 1-69
  • Synonyms
    IGHV169, IGHV1-E, IGHV1E
  • Links
    NCBI Gene ID: 28461
    UniProt: P01742

  • Chr Location
    14q32.33; chr14:106714682-106715181 (-)  GRCh38
  • Human Ortholog
    IGHV1-69-2, immunoglobulin heavy variable 1-69-2
  • Synonyms
    IGHV1-F, IGHV1F
  • Links
    NCBI Gene ID: 28458
    UniProt: A0A0G2JMI3

  • Chr Location
    14q32.33; chr14:106737110-106737547 (-)  GRCh38
  • Human Ortholog
    IGHV1-69D, immunoglobulin heavy variable 1-69D
  • Links
    NCBI Gene ID: 102723169
    UniProt: A0A0B4J2H0

  • Chr Location
    14q32.33; chr14:106762092-106762588 (-)  GRCh38
  • Human Ortholog
    IGHV1OR15-1, immunoglobulin heavy variable 1/OR15-1 (non-functional)
  • Synonyms
    IGHV1/OR15-1, IGHV1OR151
  • Links
    NCBI Gene ID: 388077

  • Chr Location
    15q11.2
  • Human Ortholog
    IGHV1OR15-9, immunoglobulin heavy variable 1/OR15-9 (non-functional)
  • Synonyms
    IGHV1OR159, VSIG7
  • Links
    NCBI Gene ID: 390531

  • Chr Location
    15q11.1
  • Human Ortholog
    IGHV1OR21-1, immunoglobulin heavy variable 1/OR21-1 (non-functional)
  • Links
    NCBI Gene ID: 390530

  • Chr Location
    21p11.2; chr21:10649390-10649835 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 668478 NCBI Gene Model | MGI Sequence Detail 294 C57BL/6J ±  kb
polypeptide A0A0A6YW37 UniProt | EBI | MGI Sequence Detail 117 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR050199 Immunoglobulin Heavy Variable
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 6
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:167375 Nimmerjahn F, et al., FcgammaRIV deletion reveals its central role for IgG2a and IgG2b activity in vivo. Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19396-401
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory