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Carmn Gene Detail
Summary
  • Symbol
    Carmn
  • Name
    cardiac mesoderm enhancer-associated non-coding RNA
  • Synonyms
    Carmen, Mir143hg
  • Feature Type
    lncRNA gene
  • IDs
    MGI:4439832
    NCBI Gene: 328968
  • Alliance
    gene page
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:61782696-61798608 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 34.64 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    491 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439832
 lncRNA gene Chr18:61778947-61798608 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005794
 lincRNA gene Chr18:61549177-61565585 (-)
A/J MGP_AJ_G0005783
 lincRNA gene Chr18:58906702-58922618 (-)
AKR/J MGP_AKRJ_G0005760
 lincRNA gene Chr18:60528391-60544305 (-)
BALB/cJ MGP_BALBcJ_G0005762
 lincRNA gene Chr18:59030726-59046654 (-)
C3H/HeJ MGP_C3HHeJ_G0005710
 lincRNA gene Chr18:60761406-60777286 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005923
 lincRNA gene Chr18:63220917-63236828 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005266
 lincRNA gene Chr18:58452446-58468494 (-)
CAST/EiJ MGP_CASTEiJ_G0005651
 lincRNA gene Chr18:60642491-60659053 (-)
CBA/J MGP_CBAJ_G0005697
 lincRNA gene Chr18:65269367-65288387 (-)
DBA/2J MGP_DBA2J_G0005715
 lincRNA gene Chr18:58576053-58592163 (-)
FVB/NJ MGP_FVBNJ_G0005742
 lincRNA gene Chr18:57982138-57999327 (-)
LP/J MGP_LPJ_G0005796
 lincRNA gene Chr18:61406479-61422403 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005728
 lincRNA gene Chr18:66837606-66854791 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005921
 lincRNA gene Chr18:60734705-60752842 (-)
PWK/PhJ MGP_PWKPhJ_G0005596
 lincRNA gene Chr18:58806726-58822740 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005512
 lincRNA gene Chr18:60962706-60979137 (-)
WSB/EiJ MGP_WSBEiJ_G0005703
 lincRNA gene Chr18:60588702-60605045 (-)



Homology
more
  • Human Ortholog
    CARMN, cardiac mesoderm enhancer-associated non-coding RNA
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CARMN, cardiac mesoderm enhancer-associated non-coding RNA
  • Synonyms
    CARMEN, MIR143HG
  • Links
    NCBI Gene ID: 728264

  • Chr Location
    5q32; chr5:149406689-149432836 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Mice homozygous for a conditional allele activated in vascular smooth muscle exhibit exacerbated neointima formation and increased vascular smooth muscle cell proliferation following left carotid artery ligation.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    812
  • Tissues
    67
  • cDNA Data
    3
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    32
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097324 Ensembl Gene Model | MGI Sequence Detail 15913 C57BL/6J ±  kb
transcript ENSMUST00000241376 Ensembl | MGI Sequence Detail 2596 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 12
    cDNA 3
    Primer pair 8
    Other 1
References
more
  • Summaries
    All 14
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
  • Latest
    J:338926 He X, et al., The Long Noncoding RNA Cardiac Mesoderm Enhancer-Associated Noncoding RNA (Carmn) Is a Critical Regulator of Gastrointestinal Smooth Muscle Contractile Function and Motility. Gastroenterology. 2023 Apr 6;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory