Gene Expression Data
Assay Details
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Assay
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Reference:
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J:171106
Suzuki-Hirano A, et al., Dynamic spatiotemporal gene expression in embryonic mouse thalamus. J Comp Neurol. 2011 Feb 15;519(3):528-43
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:5294800
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Gene symbol:
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Shox2
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Gene name:
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SHOX homeobox 2
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Probe:
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Shox2 probe
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Visualized with:
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Alkaline phosphatase
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Results
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Specimen
5K:
embryonic day 12.5
(more  )
Note: Double labeled: blue - Shox2; brown - Shh (assay MGI:5294438).
Specimen
5K:
(close  )
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Genetic Background:
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Slc:ICR
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Cryosection
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Note:
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Double labeled: blue - Shox2; brown - Shh (assay MGI:5294438).
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: diencephalon ventricular layer |
Strong |
Regionally restricted |
5K
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Expression is present throughout the prosomere 2 ventricular zone, with expression extending into a region of the postmitotic mantle zone. It was not present in the Rim/pTh-R/Zli-shell or the Zli.
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| TS20: diencephalon mantle layer |
Present |
Regionally restricted |
5K
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Expression is present throughout the prosomere 2 ventricular zone, with expression extending into a region of the postmitotic mantle zone. It was not present in the Rim/pTh-R/Zli-shell or the Zli.
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Specimen
5L:
embryonic day 12.5
(more )
Note: Double labeled: blue - Shox2; brown - Shh (assay MGI:5294438).
Specimen
5L:
(close )
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Genetic Background:
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Slc:ICR
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
|
|
Embedding:
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Cryosection
|
|
Note:
|
Double labeled: blue - Shox2; brown - Shh (assay MGI:5294438).
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: diencephalon ventricular layer |
Strong |
Regionally restricted |
5L
|
Expression is present throughout the prosomere 2 ventricular zone, with expression extending into a region of the postmitotic mantle zone. It was not present in the Rim/pTh-R/Zli-shell or the Zli.
|
| TS20: diencephalon mantle layer |
Present |
Regionally restricted |
5L
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Expression is present throughout the prosomere 2 ventricular zone, with expression extending into a region of the postmitotic mantle zone. It was not present in the Rim/pTh-R/Zli-shell or the Zli.
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Specimen
5M:
embryonic day 12.5
(more )
Note: Double labeled: blue - Shox2; brown - Shh (assay MGI:5294438).
Specimen
5M:
(close )
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Genetic Background:
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Slc:ICR
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|
Age:
|
embryonic day 12.5
|
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Sex:
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Not Specified
|
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Type:
|
section
|
|
Fixation:
|
4% Paraformaldehyde
|
|
Embedding:
|
Cryosection
|
|
Note:
|
Double labeled: blue - Shox2; brown - Shh (assay MGI:5294438).
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: diencephalon ventricular layer |
Strong |
Regionally restricted |
5M
|
Expression is present throughout the prosomere 2 ventricular zone, with expression extending into a region of the postmitotic mantle zone. It was not present in the Rim/pTh-R/Zli-shell or the Zli.
|
| TS20: diencephalon mantle layer |
Present |
Regionally restricted |
5M
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Expression is present throughout the prosomere 2 ventricular zone, with expression extending into a region of the postmitotic mantle zone. It was not present in the Rim/pTh-R/Zli-shell or the Zli.
|
Specimen
5N:
embryonic day 12.5
(more )
Note: Double labeled: blue - Shox2; brown - Shh (assay MGI:5294438).
Specimen
5N:
(close )
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Genetic Background:
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Slc:ICR
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
|
section
|
|
Fixation:
|
4% Paraformaldehyde
|
|
Embedding:
|
Cryosection
|
|
Note:
|
Double labeled: blue - Shox2; brown - Shh (assay MGI:5294438).
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: diencephalon ventricular layer |
Strong |
Regionally restricted |
5N
|
Expression is present throughout the prosomere 2 ventricular zone, with expression extending into a region of the postmitotic mantle zone. It was not present in the Rim/pTh-R/Zli-shell or the Zli.
|
| TS20: diencephalon mantle layer |
Present |
Regionally restricted |
5N
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Expression is present throughout the prosomere 2 ventricular zone, with expression extending into a region of the postmitotic mantle zone. It was not present in the Rim/pTh-R/Zli-shell or the Zli.
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Specimen
5O:
embryonic day 12.5
(more )
Note: Double labeled: blue - Shox2; brown - Shh (assay MGI:5294438).
Specimen
5O:
(close )
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Genetic Background:
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Slc:ICR
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|
Age:
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embryonic day 12.5
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Sex:
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Not Specified
|
|
Type:
|
section
|
|
Fixation:
|
4% Paraformaldehyde
|
|
Embedding:
|
Cryosection
|
|
Note:
|
Double labeled: blue - Shox2; brown - Shh (assay MGI:5294438).
|
| Structure |
Level |
Pattern |
Image |
Note |
| TS20: diencephalon ventricular layer |
Strong |
Regionally restricted |
5O
|
Expression is present throughout the prosomere 2 ventricular zone, with expression extending into a region of the postmitotic mantle zone. It was not present in the Rim/pTh-R/Zli-shell or the Zli.
|
| TS20: diencephalon mantle layer |
Present |
Regionally restricted |
5O
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Expression is present throughout the prosomere 2 ventricular zone, with expression extending into a region of the postmitotic mantle zone. It was not present in the Rim/pTh-R/Zli-shell or the Zli.
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Analysis Tools