Gene Expression Data
Assay Details
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Assay
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Reference:
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J:166819
Zagami CJ, et al., Molecular characterization of the mouse superior lateral parabrachial nucleus through expression of the transcription factor Runx1. PLoS One. 2010;5(11):e13944
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Assay type:
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In situ reporter (knock in)
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MGI Accession ID:
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MGI:6451617
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Gene symbol:
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Runx1
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Gene name:
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runt related transcription factor 1
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Reporter:
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lacZ
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Direct Detection
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Results
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Specimen
1A1:
embryonic day 11.5; Runx1tm2Spe/Runx1 +
(more  )
Specimen
1A1:
(close  )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Absent |
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1A1
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No expression in dorsal area of rostral hindbrain which does not yet appear fully developed.
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Specimen
1A2:
embryonic day 11.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1A2:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Absent |
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1A2
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No expression in dorsal area of rostral hindbrain which does not yet appear fully developed.
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Specimen
1A3:
embryonic day 11.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1A3:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Absent |
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1A3
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No expression in dorsal area of rostral hindbrain which does not yet appear fully developed.
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Specimen
1A4:
embryonic day 11.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1A4:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: hindbrain |
Absent |
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1A4
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No expression in dorsal area of rostral hindbrain which does not yet appear fully developed.
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Specimen
1B1:
embryonic day 12.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1B1:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
1B1
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Expression in dorsolateral position of rostral hindbrain, near border with midbrain, rostral to cerebellum.
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Specimen
1B2:
embryonic day 12.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1B2:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
1B2
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Group of expressing cells appear triangular in shape, particularly at the more rostral extent.
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Specimen
1B3:
embryonic day 12.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1B3:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
1B3
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Expressing cells become increasingly more dorsal in section from rostral to caudal.
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Specimen
1B4:
embryonic day 12.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1B4:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: hindbrain |
Present |
Regionally restricted |
1B4
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Expressing cells become increasingly more dorsal in section from rostral to caudal.
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Specimen
1C1:
embryonic day 14.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1C1:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 14.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS22: hindbrain |
Present |
Regionally restricted |
1C1
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Expression in dorsolateral position of rostral hindbrain, near border with midbrain, rostral to cerebellum.
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Specimen
1C2:
embryonic day 14.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1C2:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 14.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS22: hindbrain |
Present |
Regionally restricted |
1C2
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Expressing cells become increasingly more dorsal in section from rostral to caudal.
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Specimen
1C3:
embryonic day 14.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1C3:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 14.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS22: hindbrain |
Present |
Regionally restricted |
1C3
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Expressing cells become increasingly more dorsal in section from rostral to caudal.
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Specimen
1C4:
embryonic day 14.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1C4:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 14.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS22: hindbrain |
Present |
Regionally restricted |
1C4
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Expressing cells become increasingly more dorsal in section from rostral to caudal.
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Specimen
1D1:
embryonic day 18.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1D1:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: hindbrain |
Present |
Regionally restricted |
1D1
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Expression in dorsolateral position of rostral hindbrain, near border with midbrain, rostral to cerebellum.`
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Specimen
1D2:
embryonic day 18.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1D2:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: hindbrain |
Present |
Regionally restricted |
1D2
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Expressing cells become increasingly more dorsal in section from rostral to caudal.
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Specimen
1D3:
embryonic day 18.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1D3:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: hindbrain |
Present |
Regionally restricted |
1D3
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Expressing cells become increasingly more dorsal in section from rostral to caudal.
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Specimen
1D4:
embryonic day 18.5; Runx1tm2Spe/Runx1 +
(more )
Specimen
1D4:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: hindbrain |
Present |
Regionally restricted |
1D4
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Expressing cells become increasingly more dorsal in section from rostral to caudal.
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Specimen
2:
postnatal adult; Runx1tm2Spe/Runx1 +
(more )
Specimen
2:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: brain |
Present |
Regionally restricted |
2
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Expression in cells situated amongst and medial to fibers of the lateral lemniscus, ventral to inferior colliculus and dorsolateral to superior cerebellar peduncle.
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Specimen
S1A:
postnatal adult; Runx1tm2Spe/Runx1 +
(more )
Specimen
S1A:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: hindbrain |
Present |
Regionally restricted |
S1A
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Roughly triangular group of fairly dense expressing cells in dorsolateral rostral hindbrain.
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Specimen
7C1?C3:
embryonic day 18.5; Runx1tm2Spe/Runx1 +
(more )
Note: Double labeled: green - Runx1 reporter; purple - Vglu2 RNA (Slc17a6 assay MGI:6451635).
Specimen
7C1?C3:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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embryonic day 18.5
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Double labeled: green - Runx1 reporter; purple - Vglu2 RNA (Slc17a6 assay MGI:6451635).
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| Structure |
Level |
Pattern |
Image |
Note |
| TS26: hindbrain |
Present |
Regionally restricted |
7C1
,
7C3
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Expression in dorsolateral rostral hindbrain.
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Specimen
7D1/D3:
postnatal day 20; Runx1tm2Spe/Runx1 +
(more )
Note: Double labeled: green - Runx1 reporter; purple - Vglu2 RNA (Slc17a6 assay MGI:6451635).
Specimen
7D1/D3:
(close )
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Genetic Background:
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involves: 129S4/SvJae
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Mutant Allele(s):
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Runx1tm2Spe/Runx1+
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Age:
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postnatal day 20
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Sex:
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Not Specified
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Type:
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section
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Embedding:
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Cryosection
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Note:
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Double labeled: green - Runx1 reporter; purple - Vglu2 RNA (Slc17a6 assay MGI:6451635).
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: hindbrain |
Present |
Regionally restricted |
7D1
,
7D3
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Expression in dorsolateral rostral hindbrain.
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Analysis Tools