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Gene Expression Data
Assay Details
Assay
Reference: J:316879 Negretti NM, et al., A single-cell atlas of mouse lung development. Development. 2021 Dec 15;148(24):dev199512
Assay type: RNA in situ
MGI Accession ID: MGI:7520021
Gene symbol: Hopx
Gene name: HOP homeobox
Probe: Mm-Hopx (405161)
Probe preparation: Antisense
Visualized with: Fluorescence
Results
Specimen 3K Hopx E15: embryonic day 15.0 (more )
Note: Triple labeled: white - Hopx; red - Cdkn1a (assay MGI:7520017); green - Sftpc (assay MGI:7520018).
Structure Cell Type Level Pattern Image Note
TS23: lung pulmonary alveolar type 1 cell Present 3K E15 inset , 3K E15 Expression in type I (AT1) cells.
Specimen 3K Hopx P0: postnatal day 0 (more )
Note: Triple labeled: white - Hopx; red - Cdkn1a (assay MGI:7520017); green - Sftpc (assay MGI:7520018).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present 3K P0 inset , 3K P0 Expression in type I (AT1) cells.
Specimen 3K Hopx P14: postnatal day 14 (more )
Note: Triple labeled: white - Hopx; red - Cdkn1a (assay MGI:7520017); green - Sftpc (assay MGI:7520018).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present 3K P14 , 3K P14 inset Expression in type I (AT1) cells.
Specimen S3 Hopx E15: embryonic day 15.0 (more )
Note: Triple labeled: white - Hopx; red - Cdkn1a (assay MGI:7520017); green - Sftpc (assay MGI:7520018).
Structure Cell Type Level Pattern Image Note
TS23: lung pulmonary alveolar type 1 cell Present S3_E15 (merge) inset , S3_E15 (merge) , S3_E15 Hopx , S3_E15 Hopx inset Expression in type I (AT1) cells.
Specimen S3 Hopx E18: embryonic day 18.0 (more )
Note: Triple labeled: white - Hopx; red - Cdkn1a (assay MGI:7520017); green - Sftpc (assay MGI:7520018).
Structure Cell Type Level Pattern Image Note
TS26: lung alveolus pulmonary alveolar type 1 cell Present S3_E18 (merge) , S3_E18 Hopx inset , S3_E18 Hopx , S3_E18 (merge) inset Expression in type I (AT1) cells.
Specimen S3 Hopx P0: postnatal day 0 (more )
Note: Triple labeled: white - Hopx; red - Cdkn1a (assay MGI:7520017); green - Sftpc (assay MGI:7520018).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present S3_P0 (merge) inset , S3_P0 (merge) , S3_P0 Hopx , S3_P0 Hopx inset Expression in type I (AT1) cells.
Specimen S3 Hopx P3: postnatal day 3 (more )
Note: Triple labeled: white - Hopx; red - Cdkn1a (assay MGI:7520017); green - Sftpc (assay MGI:7520018).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present S3_P3 Hopx , S3_P3 Hopx inset , S3_P3 (merge) inset , S3_P3 (merge) Expression in type I (AT1) cells.
Specimen S3 Hopx P5: postnatal day 5 (more )
Note: Triple labeled: white - Hopx; red - Cdkn1a (assay MGI:7520017); green - Sftpc (assay MGI:7520018).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S3_P5 Hopx , S3_P5 (merge) inset , S3_P5 Hopx inset , S3_P5 (merge) Expression in type I (AT1) cells.
Specimen S3 Hopx P7: postnatal day 7 (more )
Note: Triple labeled: white - Hopx; red - Cdkn1a (assay MGI:7520017); green - Sftpc (assay MGI:7520018).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S3_P7 Hopx inset , S3_P7 (merge) , S3_P7 Hopx , S3_P7 (merge) inset Expression in type I (AT1) cells.
Specimen S3 Hopx P14: postnatal day 14 (more )
Note: Triple labeled: white - Hopx; red - Cdkn1a (assay MGI:7520017); green - Sftpc (assay MGI:7520018).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S3_P14 (merge) inset , S3_P14 Hopx , S3_P14 Hopx inset , S3_P14 (merge) Expression in type I (AT1) cells.
Specimen 6G Hopx E18: embryonic day 18.0 (more )
Note: Double labeled: white - Hopx; red - Lama3 (assay MGI:7520041).
Structure Cell Type Level Pattern Image Note
TS26: lung alveolus pulmonary alveolar type 1 cell Present 6G E18 , 6G E18 inset Expression in type I (AT1) cells.
Specimen 6G Hopx P0: postnatal day 0 (more )
Note: Double labeled: white - Hopx; red - Lama3 (assay MGI:7520041).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present 6G P0 , 6G P0 inset Expression in type I (AT1) cells.
Specimen 6G Hopx P5: postnatal day 5 (more )
Note: Double labeled: white - Hopx; red - Lama3 (assay MGI:7520041).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present 6G P5 , 6G P5 inset Expression in type I (AT1) cells.
Specimen S9A Hopx E15: embryonic day 15.0 (more )
Note: Double labeled: white - Hopx; red - Lama3 (assay MGI:7520041).
Structure Cell Type Level Pattern Image Note
TS23: lung pulmonary alveolar type 1 cell Present S9A E15 , S9A E15 inset Expression in type I (AT1) cells.
Specimen S9A Hopx E18: embryonic day 18.0 (more )
Note: Double labeled: white - Hopx; red - Lama3 (assay MGI:7520041).
Structure Cell Type Level Pattern Image Note
TS26: lung alveolus pulmonary alveolar type 1 cell Present S9A E18 inset , S9A E18 Expression in type I (AT1) cells.
Specimen S9A Hopx P0: postnatal day 0 (more )
Note: Double labeled: white - Hopx; red - Lama3 (assay MGI:7520041).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present S9A P0 inset , S9A P0 Expression in type I (AT1) cells.
Specimen S9A Hopx P3: postnatal day 3 (more )
Note: Double labeled: white - Hopx; red - Lama3 (assay MGI:7520041).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present S9A P3 inset , S9A P3 Expression in type I (AT1) cells.
Specimen S9A Hopx P5: postnatal day 5 (more )
Note: Double labeled: white - Hopx; red - Lama3 (assay MGI:7520041).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S9A P5 , S9A P5 inset Expression in type I (AT1) cells.
Specimen S9A Hopx P7: postnatal day 7 (more )
Note: Double labeled: white - Hopx; red - Lama3 (assay MGI:7520041).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S9A P7 , S9A P7 inset Expression in type I (AT1) cells.
Specimen S9A Hopx P14: postnatal day 14 (more )
Note: Double labeled: white - Hopx; red - Lama3 (assay MGI:7520041).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S9A P14 inset , S9A P14 Expression in type I (AT1) cells.
Specimen 6I Hopx E18: embryonic day 18.0 (more )
Note: Double labeled: white - Hopx; red - Col4a3 (assay MGI:7520042).
Structure Cell Type Level Pattern Image Note
TS26: lung alveolus pulmonary alveolar type 1 cell Present 6I E18 , 6I E18 inset Expression in type I (AT1) cells.
Specimen 6I Hopx P0: postnatal day 0 (more )
Note: Double labeled: white - Hopx; red - Col4a3 (assay MGI:7520042).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present 6I P0 , 6I P0 inset Expression in type I (AT1) cells.
Specimen 6I Hopx P5: postnatal day 5 (more )
Note: Double labeled: white - Hopx; red - Col4a3 (assay MGI:7520042).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present 6I P5 inset , 6I P5 Expression in type I (AT1) cells.
Specimen S10B Hopx E18: embryonic day 18.0 (more )
Note: Double labeled: white - Hopx; red - Col4a3 (assay MGI:7520042).
Structure Cell Type Level Pattern Image Note
TS26: lung alveolus pulmonary alveolar type 1 cell Present S10B E18 , S10B E18 inset Expression in type I (AT1) cells.
Specimen S10B Hopx P0: postnatal day 0 (more )
Note: Double labeled: white - Hopx; red - Col4a3 (assay MGI:7520042).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present S10B P0 inset , S10B P0 Expression in type I (AT1) cells.
Specimen S10B Hopx P5: postnatal day 5 (more )
Note: Double labeled: white - Hopx; red - Col4a3 (assay MGI:7520042).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S10B P5 , S10B P5 inset Expression in type I (AT1) cells.
Specimen 6K Hopx E18: embryonic day 18.0 (more )
Note: Double labeled: white - Hopx; red - Fbln5 (assay MGI:7520043).
Structure Cell Type Level Pattern Image Note
TS26: lung alveolus pulmonary alveolar type 1 cell Present 6K E18 , 6K E18 inset Expression in type I (AT1) cells.
Specimen 6K Hopx P0: postnatal day 0 (more )
Note: Double labeled: white - Hopx; red - Fbln5 (assay MGI:7520043).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present 6K P0 , 6K P0 inset Expression in type I (AT1) cells.
Specimen 6K Hopx P5: postnatal day 5 (more )
Note: Double labeled: white - Hopx; red - Fbln5 (assay MGI:7520043).
Structure Level Pattern Image Note
TS28: lung alveolus Present 6K P5 , 6K P5 inset Expression in type I (AT1) cells.
Specimen S10A Hopx E15: embryonic day 15.0 (more )
Note: Double labeled: white - Hopx; red - Fbln5 (assay MGI:7520043).
Structure Cell Type Level Pattern Image Note
TS23: lung pulmonary alveolar type 1 cell Present S10A E15 , S10A E15 inset Expression in type I (AT1) cells.
Specimen S10A Hopx E18: embryonic day 18.0 (more )
Note: Double labeled: white - Hopx; red - Fbln5 (assay MGI:7520043).
Structure Cell Type Level Pattern Image Note
TS26: lung alveolus pulmonary alveolar type 1 cell Present S10A E18 inset , S10A E18 Expression in type I (AT1) cells.
Specimen S10A Hopx P0: postnatal day 0 (more )
Note: Double labeled: white - Hopx; red - Fbln5 (assay MGI:7520043).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present S10A P0 inset , S10A P0 Expression in type I (AT1) cells.
Specimen S10A Hopx P3: postnatal day 3 (more )
Note: Double labeled: white - Hopx; red - Fbln5 (assay MGI:7520043).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present S10A P3 inset , S10A P3 Expression in type I (AT1) cells.
Specimen S10A Hopx P5: postnatal day 5 (more )
Note: Double labeled: white - Hopx; red - Fbln5 (assay MGI:7520043).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S10A P5 inset , S10A P5 Expression in type I (AT1) cells.
Specimen S10A Hopx P7: postnatal day 7 (more )
Note: Double labeled: white - Hopx; red - Fbln5 (assay MGI:7520043).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S10A P7 , S10A P7 inset Expression in type I (AT1) cells.
Specimen S10A Hopx P14: postnatal day 14 (more )
Note: Double labeled: white - Hopx; red - Fbln5 (assay MGI:7520043).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S10A P14 inset , S10A P14 Expression in type I (AT1) cells.
Specimen S10C Hopx E18: embryonic day 18.0 (more )
Note: Double labeled: white - Hopx; red - Col4a1 (assay MGI:7520044).
Structure Cell Type Level Pattern Image Note
TS26: lung alveolus pulmonary alveolar type 1 cell Present S10C E18 inset , S10C E18 Expression in type I (AT1) cells.
Specimen S10C Hopx P0: postnatal day 0 (more )
Note: Double labeled: white - Hopx; red - Col4a1 (assay MGI:7520044).
Structure Cell Type Level Pattern Image Note
TS27: lung alveolus pulmonary alveolar type 1 cell Present S10C P0 inset , S10C P0 Expression in type I (AT1) cells.
Specimen S10C Hopx P5: postnatal day 5 (more )
Note: Double labeled: white - Hopx; red - Col4a1 (assay MGI:7520044).
Structure Cell Type Level Pattern Image Note
TS28: lung alveolus pulmonary alveolar type 1 cell Present S10C P5 inset , S10C P5 Expression in type I (AT1) cells.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/10/2024
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