About   Help   FAQ
Csn1s2a Gene Detail
Summary
  • Symbol
    Csn1s2a
  • Name
    casein alpha s2-like A
  • Synonyms
    Csn1s2a, Csng
  • Feature Type
    protein coding gene
  • IDs
    MGI:88542
    NCBI Gene: 12993
  • Member of
    Csn cluster
  • Alliance
    gene page
  • Transcription Start Sites
    32 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:87922426-87936656 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 43.56 cM
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    409 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_88542
 protein coding gene Chr5:87922309-87936657 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029691
 protein coding gene Chr5:88731763-88746374 (+)
A/J MGP_AJ_G0029658
 protein coding gene Chr5:85115584-85129821 (+)
AKR/J MGP_AKRJ_G0029604
 protein coding gene Chr5:87932326-87948619 (+)
BALB/cJ MGP_BALBcJ_G0029667
 protein coding gene Chr5:86027678-86046238 (+)
C3H/HeJ MGP_C3HHeJ_G0029390
 protein coding gene Chr5:88337073-88352287 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030122
 protein coding gene Chr5:92391450-92406285 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027360
 protein coding gene Chr5:80730406-80744698 (+)
CAST/EiJ MGP_CASTEiJ_G0028800
 protein coding gene Chr5:87713866-87733582 (+)
CBA/J MGP_CBAJ_G0029359
 protein coding gene Chr5:95275758-95296346 (+)
DBA/2J MGP_DBA2J_G0029504
 protein coding gene Chr5:85286570-85300799 (+)
FVB/NJ MGP_FVBNJ_G0029464
 protein coding gene Chr5:84199101-84213339 (+)
LP/J MGP_LPJ_G0029592
 protein coding gene Chr5:89143550-89157741 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029493
 protein coding gene Chr5:100339142-100360053 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030155
 protein coding gene Chr5:87492191-87507017 (+)
PWK/PhJ MGP_PWKPhJ_G0028519
 protein coding gene Chr5:84272288-84286658 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028357
 protein coding gene Chr5:86905468-86919848 (+)
WSB/EiJ MGP_WSBEiJ_G0028879
 protein coding gene Chr5:87884662-87898860 (+)



Homology
more
  • Human Ortholog
    CSN1S2AP, casein alpha s2 like A, pseudogene
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CSN1S2AP, casein alpha s2 like A, pseudogene
  • Synonyms
    CSN1S2A
  • Links
    NCBI Gene ID: 286828

  • Chr Location
    4q13.3; chr4:70067386-70085290 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    901
  • Tissues
    21
  • cDNA Data
    9
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000061937 Ensembl Gene Model | MGI Sequence Detail 14231 C57BL/6J ±  kb
transcript ENSMUST00000076379 Ensembl | MGI Sequence Detail 920 Not Applicable  
polypeptide ENSMUSP00000075716 Ensembl | MGI Sequence Detail 184 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 20
    Genomic 8
    cDNA 12

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-2200
References
more
  • Summaries
    All 37
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 11
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory