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Ath16C57BL/6J
QTL Variant Detail
Summary
QTL variant: Ath16C57BL/6J
Name: atherosclerosis 16; C57BL/6J
MGI ID: MGI:2386549
QTL: Ath16  Location: Chr19:42426917-42427005 bp  Genetic Position: Chr19, cM position of peak correlated region/allele: 33.03 cM
QTL Note: genome coordinates based on the marker associated with the peak LOD score
Variant
origin
Strain of Specimen:  C57BL/6J
Variant
description
Allele Type:    QTL
Mutation:    Undefined
    This allele confers decreased aortic lesion size compared to FVB/NCr.
Inheritance:    Recessive
Phenotypes
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View phenotypes and curated references for all genotypes (concatenated display).
Expression
In Structures Affected by this Mutation: 1 anatomical structure(s)
Notes

Mapping and Phenotype information for this QTL, its variants and associated markers

J:76127

Two independent strain intercosses that carry atherosclerosis phenotype-sensitizing Apoe deficiency were performed to reveal artherosclerosis susceptibility loci that are distinct from loci linked to lipoprotein levels.

Animals from a C57BL/6J-derived background are susceptible to atherosclerosis and yield several-fold higher aortic lesion scores compared to animals from an FVB/NCr-derived background.

In the first cross, referred to as cross 1, B6.129P2-Apoetm1Unc x FVB.129P2-Apoetm1Bres F1 mice were crossed and the F1 offspring were intercrossed to create 197 (B6.129P2-Apoetm1Unc x FVB.129P2-Apoetm1Bres) F2 mice for the QTL analysis. Interval mapping was done with 194 markers at a distance of no more than 10cM.

In the second, confirmatory cross, B6.129P2-Apoetm1Unc x FVB.129P2-Apoetm1Bres F1 mice were crossed and the F1 offspring were intercrossed to create 186 (B6.129P2-Apoetm1Unc x FVB.129P2-Apoetm1Bres)F2 mice for QTL analysis. This cross was referred to as cross 2; these mice were genotyped using 127 markers at no more than 10cM intervals.

A QTL observed on Chr 19 in cross 1 but not in cross 2 has been named Ath16. Single marker and interval mapping revealed a peak at D19Mit120 (LOD 3.8 in male F2 mice, no linkage was found in female mice on chromosome 19). FVB/NCr-derived alleles confer increased lesion size in a dominant manner at this locus.

Ath16 is evolutionarily conserved with human chromosomal regions 9q12-21, 9q24 and 10q23-26. Possible candidate genes for Ath16 areVldlr, Fgf8, Csf2ra, and Prdx3.

References
Original:  J:76127 Dansky HM, et al., A phenotype-sensitizing apoe-deficient genetic background reveals novel atherosclerosis predisposition Loci in the mouse. Genetics. 2002 Apr;160(4):1599-608
All:  1 reference(s)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
11/12/2024
MGI 6.24
The Jackson Laboratory