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Lfp3CS
QTL Variant Detail
Summary
QTL variant: Lfp3CS
Name: long free running period 3; CS
MGI ID: MGI:2446823
QTL: Lfp3  Location: Chr19:3328551-3328703 bp  Genetic Position: Chr19, cM position of peak correlated region/allele: 3.04 cM
QTL Note: genome coordinates based on the marker associated with the peak LOD score
Variant
origin
Strain of Specimen:  CS
Variant
description
Allele Type:    QTL
Phenotypes
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View phenotypes and curated references for all genotypes (concatenated display).
Notes

Mapping and Phenotype information for this QTL, its variants and associated markers

J:68402

QTLs associated with free running period were provisionally mapped in 289 animals from a (CS x C57BL/6)F2 intercross and confirmed in 192 animals from a (CS x MSM)F2 intercross. Parental strain CS exhibits unstable free running patterns and spontaneous rhythm splitting whereas parental strains C57BL/6 and MSM exhibit regular running patterns.

QTLs for long free running period were identified on mouse Chromosome 19 in the

(CS x MSM)F2 intercross:

Lfp1 maps from 50 cM - tel with a LOD = 4.61 at D19Mit33;

Lfp2 maps from 26 cM - 47 cM with a LOD = 4.26 at D19Mit5;

and Lfp3 maps from 0 cM - 26 cM with a suggestive LOD = 3.85 at D19Mit32.

[See Fig 5.]

CS-derived alleles appear to increase the length of the free running period at Lfp1, Lfp2, and Lfp3 in a recessively inherited fashion. No obvious candidate genes were identified at these loci.

A suggestive locus mapped to mouse Chromosome 12 from 25 cM - 45 cM with LOD = 3.24 at D12Mit4 in the (CS x C57BL/6)F2 intercross but did not reach statistical significance withthe (CS x MSM)F2 intercross.

References
Original:  J:68402 Suzuki T, et al., Quantitative trait locus analysis of abnormal circadian period in CS mice. Mamm Genome. 2001 Apr;12(4):272-7
All:  1 reference(s)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory