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Variant origin |
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Variant description |
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Phenotypes |
View phenotypes and curated references for all genotypes (concatenated display).
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Expression |
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Notes |
Mapping and Phenotype information for this QTL, its variants and associated markersJ:139423A series of nested subcongenic strains derived from C3H/HeJ donor DNA at the Bmd5 locus on a C57BL/6J genetic background was used to refine the QTL into three separate regions named Bmd5a, Bmd5b and Bmd5c. Bmd5 (bone mineral density 5) previously mapped to 81.6 cM on mouse Chromosome 1 and appears cover a broad area containing more than one QTL. Parental strain C3H/HeJ displays increased femoral bone mineral density compared to parental strain C57BL/6J. The phenotype also appears to be dependent on sex as females from C3H/HeJ and C57BL/6J display different bone traits compared to males from C3H/HeJ and C57BL/6J. Animals were sacrificed and phenotyped for femur BMD and trabecular thickness at 16 weeks of age. Bmd5a (bone mineral density 5a) is correlatedwith marker D1Mit355 (97 cM; 175.335 Mb) and the QTL interval is flanked by rs30595455 (175.298 Mb) and rs6197487 (175.438 Mb). C3H/HeJ-derived alleles atBmd5a confer decreased vBMD and cortical thickness in males while increasing vBMD, cortical thicknessand BV/TV in females. Potential candidate genes for Bmd5a are Aim2 (formerly Gm1313; 175.28 Mb) and the predicted gene EG240921 (175.39 Mb).Bmd5b (bone mineral density 5b) is flanked by D1Mit111 (92.3 cM; 170.937 Mb) and rs3710340 (173.868 Mb). Males fromtwo congenic sublines carrying Bmd5b displayed increased trabecular thickness while males from two congenic sublines carrying Bmd5b displayed increased trabecular thickness; however, all congenic sublines with C3H/HeJ-derived DNA at Bmd5b had increasedBV/TB. The Bmd5b interval contains 71 known genes. Candidate genes have not been proposed for Bmd5b at this time.Bmd5c (bone mineral density 5c) is flanked by rs3710340 (173.868 Mb) and D1Kls6-1 within D1Mit149. This locus appears to be male specific. C3H/HeJ-derivedalleles at Bmd5c confer increased femoral trabecular thickness in males. Bmd5c may act dominantly on Bmd5b to prevent an increase in trabecular number. Thirty-one known genes are contained in the Bmd5c interval but no potential candidates have been proposedat this time. |
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References |
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 11/12/2024 MGI 6.24 |
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