About   Help   FAQ
Hdlq92C57BL/6J
QTL Variant Detail
Summary
QTL variant: Hdlq92C57BL/6J
Name: HDL QTL 92; C57BL/6J
MGI ID: MGI:3839758
QTL: Hdlq92  Location: unknown  Genetic Position: Chr3, Syntenic
Variant
origin
Strain of Specimen:  C57BL/6J
Variant
description
Allele Type:    QTL
Mutation:    Undefined
 
Mutation detailsThis allele confers increased plasma HDL concentration in males on a CHOW diet compared to 129S1/SvImJ. (J:144089)
Inheritance:    Not Specified
Phenotypes
Loading...
View phenotypes and curated references for all genotypes (concatenated display).
Expression
In Structures Affected by this Mutation: 1 anatomical structure(s)
Notes

Mapping and Phenotype information for this QTL, its variants and associated markers

J:144089

Linkage analysis was performed on 528 animals from a (C57BL/6J x 129S1/SvImJ)F2 intercross to map QTL associated with plasma HDL levels on either a CHOW or atherogenic diet. F2 animals were fed a CHOW diet until 8 weeks of age and then placed on an atherogenic diet until 16 weeks of age. An array of 508 SNPs was used for genome scan. Plasma HDL is significantly higher in 129S1/SvImJ parental strain compared to C57BL/7J on CHOW and high fat diets, with a stronger effect observed in males compared to females. Several previously identified HDL QTL were detected in this study as well as several novel loci, some of which showed interactive effects.

Hdlq21 (HDL QTL 21) on mouse Chromosome 3 mapped to 124.8 Mb (61.8 cM) near rs13477384 and is associated with increased plasma HDL on a CHOW diet (LOD=5.4). This QTL was identified in a previous study and has a male-specific effect. The Hdlq21 95% confidence interval spans 117 Mb (55 cM) to 129 Mb (162 cM). C57BL/6J-derived alleles at Hdlq21 confer increased plasma HDL in males on CHOW diet.

12.15.2014_djr Curator's Note: Because Hdlq21 was originally mapped in J:89309 in 2004 using a (SM/J x NZB/BlNJ)F2 intercross, which differs from the cross used here, we consider the current study a separate mapping experiment and have named this QTL Hdlq92.

References
Original:  J:144089 Su Z, et al., Genetic basis of HDL variation in 129/SvImJ and C57BL/6J mice: importance of testing candidate genes in targeted mutant mice. J Lipid Res. 2009 Jan;50(1):116-25
All:  1 reference(s)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
11/05/2024
MGI 6.24
The Jackson Laboratory