Summary |
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Variant origin |
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Variant description |
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Phenotypes |
View phenotypes and curated references for all genotypes (concatenated display).
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Notes |
Hdlq60 interacts with Hdlq15 on chromosome 1. Homozygosity for 129S1/SvImJ alleles at Hdlq15 in conjunction with at least one C57BL/6J allele at Hdlq60 confers significant increased plasma HDL concentration in animals fed an atherogenic diet.
Mapping and Phenotype information for this QTL, its variants and associated markersJ:144089Linkage analysis was performed on 528 animals from a (C57BL/6J x 129S1/SvImJ)F2 intercross to map QTL associated with plasma HDL levels on either a CHOW or atherogenic diet. F2 animals were fed a CHOW diet until 8 weeks of age and then placed on an atherogenic diet until 16 weeks of age. An array of 508 SNPs was used for genome scan. Plasma HDL is significantly higher in 129S1/SvImJ parental strain compared to C57BL/7J on CHOW and high fat diets, with a stronger effect observed in males compared to females. Several previously identified HDL QTL were detected in this study as well as several novel loci, some of which showed interactive effects. A novel locus named Hdlq60 (HDL QTL 60) on mouse chromosome X was detected via interaction with Hdlq15 on chromosome 1. Homozygosity for 129S1/SvImJ-derived alleles at Hdlq15 in conjunction with at least one C57BL/6J-derived alleleat Hdlq60 significantly increased plasma HDL levels in males and females on an atherogenic diet. Hdlq60 displays peak linkage at 124 Mb(50 cM) on chromosome X near rs6205221. This QTL did not exhibit a single-locus effect on plasma HDL concentration. |
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References |
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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