Ddiab20^SM/J
QTL Variant Detail

Summary

• QTL variant: Ddiab20^SM/J
• Name: diet based diabetes 20; SM/J
• MGI ID: MGI:5609599
• QTL: Ddiab20 Location: unknown Genetic Position: Chr6, Syntenic

Variant origin

• Strain of Specimen: SM/J

Variant description

• Allele Type: QTL
• Mutation: Undefined
• This allele affects glucose levels and insulin levels at necropsy as well as glucose tolerance. (J:170533)

Notes

Trait Annotation
(using the Vertebrate Trait Ontology)

organism trait

metabolism trait

glucose metabolism trait - VT:0015088

insulin levels are affected relative to mice with the LG/J allele - J:170533

glucose levels are affected relative to mice with the LG/J allele - J:170533

glucose tolerance is affected relative to mice with the LG/J allele - J:170533

Mapping and Phenotype information for this QTL, its variants and associated markers

J:170533

The mice used in this study were from the F16 generation of

the LG/J X SM/J Advanced Intercross Line (Wustl:LG,SM-G16).

The authors indicated 70 trait-specific QTL mapping to 64 locations,

and of these 70 a total of 17 are significant at the genome-wide level. Fifty three are significant at the chromosome level.

The 17 genome wide significant QTL are indicated with an '*' and can be viewed here on their respective chromosome mapping records (NCBI37/mm9).

The authors mentioned that phenotypic variation in response to glucose stress was indicated by using an intraperitoneal injection of 0.01 ml of 10% glucose solution per

gram of body weight. The measurements taken over the course of 2 hours were used to calculate the area under the curve (AUC), which was used as overall measure of glucose tolerance.

Phenotypes were as follows:

AUC_10wks indicates under the curve at 10 weeks

AUC_20wks indicates area under the curve at 20 weeks

bGLC_10wks indicates basal glucose level at 10 weeks

bGLC_20wks indicates basal glucose level at 20 weeks,

GLC indicates serum glucose level at necropsy

INS indicates serum insulin level at necropsy

Chr MGI Author Pheno LOD Peak Mb 5 prime 3 Prime

6 Ddiab17 Ddiab6a AUC_20wks 3.24 48.94 48.02 51.57

6 Ddiab18 Ddiab6b bGLC_20wks 2.86 78 77.21 79.74

6 *Ddiab19 Ddiab6c AUC_20wks 7.32 88.54 84.28 91.81

6 *Ddiab20 Ddiab6d INS 8.85 107.02 100.75 115.43

6 Ddiab20 Ddiab6d nGLC 3.19 107.02

6 Ddiab20 Ddiab6d AUC_20wks 3.43 107.21

Table 1 notes the presence of glucose and/or insulin affecting genes within the mapped QTL interval as marker

References

• Original: J:170533 Lawson HA, et al., The importance of context to the genetic architecture of diabetes-related traits is revealed in a genome-wide scan of a LG/J x SM/J murine model. Mamm Genome. 2011 Apr;22(3-4):197-208
• All: 1 reference(s)