Sxbq2^C57BL/6Slc
QTL Variant Detail

Summary

• QTL variant: Sxbq2^C57BL/6Slc
• Name: SGC/Knj cross B6 QTL 2; C57BL/6Slc
• MGI ID: MGI:5694109
• QTL: Sxbq2 Location: Chr6:19912685-71299759 bp Genetic Position: Chr6, cM position of peak correlated region/allele: 8.16 cM
• QTL Note: genome coordinates based on the boundaries of the QTL region

Variant origin

• Strain of Specimen: C57BL/6Slc

Variant description

• Allele Type: QTL
• Inheritance: Not Specified

Notes

Mapping and Phenotype information for this QTL, its variants and associated markers

J:108420

Linkage analysis was performed on 420 female animals from a (C57BL/6Slc x SCG/Knj)F2 intercross to identify QTL for renal phenotypes. Parental strain SCG/Knj is derived from BXSB/Mp and MRL/Mp-Fas^lpr, and spontaneously develops crescentic glomerulonephritis and vascularitis. The Fas-^lpr mutation is largely responsible for the disease phenotype but this experiment seeks to identify non-Fas disease-associated loci. 102 polymorphic markers covering 85% of the genome at a 20 cM resolution was used for the genome scan. F2 animals were analyzed by cohorts grouped according to genotype at the Fas locus.

On mouse Chromosome 6, significant linkage to total serum IgG at 12 weeks of age mapped to an interval between D6Mit88 (3.5 cM) and D6Mit16 (30.5 cM) withLOD=4.6. This locus explains is 9% of the variance and is named Sxbq2 (SGC/Knj cross B6 QTL 2). Sxbq2 also shows suggestive linkage to total serum IgM at 12 weeks of age (LOD=3.4; 7% of the variance.) C57BL/6Slc-derived alleles at Sxbq2 confer increasedIgG and IgM with an additive mode of inheritance. Tcrb at 20.5 cM is a possible candidate gene for Sxbq2.

References

• Original: J:108420 Hamano Y, et al., Genetic dissection of vasculitis, myeloperoxidase-specific antineutrophil cytoplasmic autoantibody production, and related traits in spontaneous crescentic glomerulonephritis-forming/Kinjoh mice. J Immunol. 2006 Mar 15;176(6):3662-73
• All: 1 reference(s)