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Phenotypes associated with this allele
Allele Symbol
Allele Name
Allele ID
Hoxa3tm1Mrc
targeted mutation 1, Mario R Capecchi
MGI:1857992
Summary 9 genotypes
Jump to Allelic Composition Genetic Background Genotype ID
hm1
Hoxa3tm1Mrc/Hoxa3tm1Mrc involves: 129S7/SvEvBrd MGI:3033772
ht2
Hoxa3tm1Mrc/Hoxa3tm2Nrm involves: 129S7/SvEvBrd * C3H * C57BL/6 * C57BL/6NHsd MGI:4461317
ht3
Hoxa3tm1Nrm/Hoxa3tm1Mrc involves: 129S7/SvEvBrd * C3H * C57BL/6 * C57BL/6NHsd MGI:4461319
cn4
Hoxa3tm1Mrc/Hoxa3tm3.1Nrm
H2az2Tg(Wnt1-cre)11Rth/H2az2+
involves: 129S7/SvEvBrd * C57BL/6J * CBA/J MGI:4461312
cx5
Hoxa3tm1Mrc/Hoxa3+
Hoxb3tm1Mrc/Hoxb3tm1Mrc
involves: 129S4/SvJae * 129S7/SvEvBrd * C57BL/6J MGI:3611934
cx6
Hoxa3tm1Mrc/Hoxa3tm1Mrc
Hoxb3tm1Mrc/Hoxb3tm1Mrc
involves: 129S4/SvJae * 129S7/SvEvBrd * C57BL/6J MGI:3038610
cx7
Hoxa3tm1Mrc/Hoxa3tm1Mrc
Hoxd3tm1Mrc/Hoxd3tm1Mrc
involves: 129S7/SvEvBrd MGI:4461316
cx8
Hoxa3tm1Mrc/Hoxa3tm1Mrc
Hoxd3tm1Mrc/Hoxd3tm1Mrc
involves: 129S7/SvEvBrd * C57BL/6J MGI:3612029
cx9
Hoxa3tm1Mrc/Hoxa3+
Hoxd3tm1Mrc/Hoxd3tm1Mrc
involves: 129S7/SvEvBrd * C57BL/6J MGI:3611937


Genotype
MGI:3033772
hm1
Allelic
Composition
Hoxa3tm1Mrc/Hoxa3tm1Mrc
Genetic
Background
involves: 129S7/SvEvBrd
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa3tm1Mrc mutation (0 available); any Hoxa3 mutation (24 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• mice die within 12 hours of birth due to cardiac defects or pulmonary failure
• the abdomen was bloated with air in about 50% of the mice

cardiovascular system
• a range of cardiovascular defects were detected including those that are strong indicators of cardiovascular dysfunction; however, these did not include any septal or transposition defects
• detailed examination revealed a thin walled and poorly developed aorta
• enlargement of the chief veins including the jugular veins, pulmonary veins, and the superior and inferior vena cava was detected which coupled with hypertrophy of the atria are strong indicators of cardiovascular dysfunction
• the size and shape of the chambers of the heart are abnormal
• the right ventricle is smaller with a thinner wall
• however, the wall of the right atrium was dilated and thickened
• coronal sections revealed stenosis of the aortic valve
• a defective pulmonary valve with only two cusps was found
• in contrast to the right ventricle the wall of the left ventricle was dilated and thickened

craniofacial
• the greater horn of the hyoid bone is malformed and fused to the thyroid cartilage unlike in wild-type mice
• the lesser horn of the hyoid bone is reduced in size or absent unlike in wild-type mice
• detailed examination revealed that the lesser horn of the hyoid bone is absent (J:17753)
• in some mice (J:161296)
• the demarcation between pharyngeal arches 3 and 4 is less well defined
• the relative position of pharyngeal arch 4 is altered
• facial features appear abnormal due to shortened size and altered shape of the mandible and maxilla
• shortened
• the muscle fibers in the lower part of the tongue are disorganized

embryo
• the demarcation between pharyngeal arches 3 and 4 is less well defined
• the relative position of pharyngeal arch 4 is altered
• separated from the thyroid

endocrine/exocrine glands
• ultimobranchial body-derived C-cells fail to mix with the thyroid proper unlike in wild-type mice
• separated from the thyroid
• mice exhibit absent or ectopic ventral thyroid isthmus compared with wild-type mice
• the ventral thyroid isthmus may be absent

immune system

muscle
• the ring of muscle surrounding the esophagus is absent and these mice lack control of the esophagus
• the muscle fibers in the lower part of the tongue are disorganized

respiratory system
• the abnormalities detailed below together with those in the musculature result in breathing difficulties with air being pumped into the stomach and intestines and contribute to the bloated abdomen phenotype seen in these mice
• the larynx is positioned closer to the cervical vertebrae
• the connection of muscles to the epiglottis is disorganized and these mice lack control of the epiglottis
• the cricoid cartilage appears shortened and thickened
• the thyroid cartilage appears shortened and thickened
• the larynx is narrower than normal
• the tracheal epithelium is thicker with more convoluted surface than in wild-type mice
• the trachea is smaller and positioned closer to the cervical vertebrae

skeleton
• the greater horn of the hyoid bone is malformed and fused to the thyroid cartilage unlike in wild-type mice
• the lesser horn of the hyoid bone is reduced in size or absent unlike in wild-type mice
• detailed examination revealed that the lesser horn of the hyoid bone is absent (J:17753)
• in some mice (J:161296)
• the connection of muscles to the epiglottis is disorganized and these mice lack control of the epiglottis
• the cricoid cartilage appears shortened and thickened
• the thyroid cartilage appears shortened and thickened
• the entire thoracic region is thrust towards the head, and the end of the clavicle is at the level of the axis rather than at the level of two cervical vertebrae caudal to the axis
• the positioning of the bones in the neck is abnormal in mutant mice
• the larynx and the trachea are positioned much closer to the cervical vertebrae resulting in a visibly shorter neck

nervous system
• partial deletion of cranial nerve IX sometimes seen (J:45337)
• the glossopharyngeal nerve is either fused to the vagus nerve or disconnected from the hind brain unlike in wild-type mice (J:161296)
• cranial nerve fusions sometimes seen (J:45337)
• in some mice (J:161296)

hematopoietic system

digestive/alimentary system
• shortened
• the muscle fibers in the lower part of the tongue are disorganized
• the connection of muscles to the epiglottis is disorganized and these mice lack control of the epiglottis

growth/size/body
• facial features appear abnormal due to shortened size and altered shape of the mandible and maxilla
• shortened
• the muscle fibers in the lower part of the tongue are disorganized
• bloated due to breathing air into the esophagus

Mouse Models of Human Disease
DO ID OMIM ID(s) Ref(s)
DiGeorge syndrome DOID:11198 OMIM:188400
J:17753




Genotype
MGI:4461317
ht2
Allelic
Composition
Hoxa3tm1Mrc/Hoxa3tm2Nrm
Genetic
Background
involves: 129S7/SvEvBrd * C3H * C57BL/6 * C57BL/6NHsd
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa3tm1Mrc mutation (0 available); any Hoxa3 mutation (24 available)
Hoxa3tm2Nrm mutation (0 available); any Hoxa3 mutation (24 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging

craniofacial
N
• mice exhibit a normal soft palate

nervous system
• the glossopharyngeal nerve is either fused to the vagus nerve or disconnected from the hind brain unlike in wild-type mice

endocrine/exocrine glands
N
• unlike in null mice, the ventral thyroid isthmus and ultimobranchial are normal

immune system

respiratory system
N
• unlike in null mice, tracheal epithelia is normal

digestive/alimentary system
N
• mice exhibit a normal soft palate

growth/size/body
N
• mice exhibit a normal abdomen

hematopoietic system

skeleton




Genotype
MGI:4461319
ht3
Allelic
Composition
Hoxa3tm1Nrm/Hoxa3tm1Mrc
Genetic
Background
involves: 129S7/SvEvBrd * C3H * C57BL/6 * C57BL/6NHsd
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa3tm1Mrc mutation (0 available); any Hoxa3 mutation (24 available)
Hoxa3tm1Nrm mutation (0 available); any Hoxa3 mutation (24 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging

craniofacial
• mice exhibit a partial rescue of velum length compared with Hoxa3tm1Mrc homozygotes

endocrine/exocrine glands
N
• unlike in null mice, the ventral thyroid isthmus is normal

nervous system
• the glossopharyngeal nerve is either fused to the vagus nerve or disconnected from the hind brain unlike in wild-type mice

immune system

growth/size/body
• mice exhibit a partial rescue of velum length compared with Hoxa3tm1Mrc homozygotes
• bloated due to breathing air into the esophagus

respiratory system
N
• unlike in null mice, tracheal epithelia is normal

skeleton

digestive/alimentary system
• mice exhibit a partial rescue of velum length compared with Hoxa3tm1Mrc homozygotes

hematopoietic system




Genotype
MGI:4461312
cn4
Allelic
Composition
Hoxa3tm1Mrc/Hoxa3tm3.1Nrm
H2az2Tg(Wnt1-cre)11Rth/H2az2+
Genetic
Background
involves: 129S7/SvEvBrd * C57BL/6J * CBA/J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
H2az2Tg(Wnt1-cre)11Rth mutation (2 available); any H2az2 mutation (26 available)
Hoxa3tm1Mrc mutation (0 available); any Hoxa3 mutation (24 available)
Hoxa3tm3.1Nrm mutation (0 available); any Hoxa3 mutation (24 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
endocrine/exocrine glands
• at E15.5, parathyroids are ectopically attached to the thymus unlike in wild-type mice
• however, parathyroid morphology is normal
• at E15.5, thymic lobes are absent from their normal position and are ectopically attached to the pharynx unlike in wild-type mice
• however, thymic lobe morphology is normal

hematopoietic system
• at E15.5, thymic lobes are absent from their normal position and are ectopically attached to the pharynx unlike in wild-type mice
• however, thymic lobe morphology is normal

immune system
• at E15.5, thymic lobes are absent from their normal position and are ectopically attached to the pharynx unlike in wild-type mice
• however, thymic lobe morphology is normal




Genotype
MGI:3611934
cx5
Allelic
Composition
Hoxa3tm1Mrc/Hoxa3+
Hoxb3tm1Mrc/Hoxb3tm1Mrc
Genetic
Background
involves: 129S4/SvJae * 129S7/SvEvBrd * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa3tm1Mrc mutation (0 available); any Hoxa3 mutation (24 available)
Hoxb3tm1Mrc mutation (0 available); any Hoxb3 mutation (16 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
• lobes of thymus displaced anteriorly

endocrine/exocrine glands
• ectopic parathyroids near the anterior ends of the thymus
• lobes of thymus displaced anteriorly

hematopoietic system
• lobes of thymus displaced anteriorly




Genotype
MGI:3038610
cx6
Allelic
Composition
Hoxa3tm1Mrc/Hoxa3tm1Mrc
Hoxb3tm1Mrc/Hoxb3tm1Mrc
Genetic
Background
involves: 129S4/SvJae * 129S7/SvEvBrd * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa3tm1Mrc mutation (0 available); any Hoxa3 mutation (24 available)
Hoxb3tm1Mrc mutation (0 available); any Hoxb3 mutation (16 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• died within hours of birth

skeleton
• defective formation, 100% penetrance
• the greater horn is almost entirely missing
• progressive loss of lesser horn
• small and sometimes fused to thyroid cartilage
• poorly formed
• reduced neural arch
• anterior arch of atlas fused to basioccipital bone
• reduced neural arch

endocrine/exocrine glands
• variable development of ultimobranchial bodies, sometimes absent, sometimes persistent in adults
• sometimes absent
• sometimes persistent in adults
• absent or defective thyroid isthmus

respiratory system
• small and sometimes fused to thyroid cartilage
• poorly formed

nervous system
• absence of noradrenergic visceral sensory interneurons and associated expansion of the somatic sensory interneuron domain in rhombomere 5

craniofacial
• defective formation, 100% penetrance
• anterior arch of atlas fused to basioccipital bone
• the greater horn is almost entirely missing
• progressive loss of lesser horn

embryo
• variable development of ultimobranchial bodies, sometimes absent, sometimes persistent in adults
• sometimes absent
• sometimes persistent in adults




Genotype
MGI:4461316
cx7
Allelic
Composition
Hoxa3tm1Mrc/Hoxa3tm1Mrc
Hoxd3tm1Mrc/Hoxd3tm1Mrc
Genetic
Background
involves: 129S7/SvEvBrd
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa3tm1Mrc mutation (0 available); any Hoxa3 mutation (24 available)
Hoxd3tm1Mrc mutation (0 available); any Hoxd3 mutation (13 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
skeleton

craniofacial




Genotype
MGI:3612029
cx8
Allelic
Composition
Hoxa3tm1Mrc/Hoxa3tm1Mrc
Hoxd3tm1Mrc/Hoxd3tm1Mrc
Genetic
Background
involves: 129S7/SvEvBrd * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa3tm1Mrc mutation (0 available); any Hoxa3 mutation (24 available)
Hoxd3tm1Mrc mutation (0 available); any Hoxd3 mutation (13 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
endocrine/exocrine glands
• pyramidal ventral lobes
• ultimobranchial bodies, 100% persistent in adults

immune system

embryo
• ultimobranchial bodies, 100% persistent in adults

hematopoietic system




Genotype
MGI:3611937
cx9
Allelic
Composition
Hoxa3tm1Mrc/Hoxa3+
Hoxd3tm1Mrc/Hoxd3tm1Mrc
Genetic
Background
involves: 129S7/SvEvBrd * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa3tm1Mrc mutation (0 available); any Hoxa3 mutation (24 available)
Hoxd3tm1Mrc mutation (0 available); any Hoxd3 mutation (13 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
• lobes of thymus displaced anteriorly

endocrine/exocrine glands
• ectopic parathyroids near the anterior ends of the thymus
• lobes of thymus displaced anteriorly

hematopoietic system
• lobes of thymus displaced anteriorly





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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory