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Phenotypes associated with this allele
Allele Symbol
Allele Name
Allele ID
Hoxa9tm1Ipc
targeted mutation 1, I Pierre Chambon
MGI:2150411
Summary 6 genotypes
Jump to Allelic Composition Genetic Background Genotype ID
hm1
Hoxa9tm1Ipc/Hoxa9tm1Ipc either: 129/Sv-Hoxa9tm1Ipc or (involves: 129/Sv * 129S2/SvPas * C57BL/6) MGI:3844448
ht2
Hoxa9tm1Ipc/Hoxa9+ either: 129/Sv-Hoxa9tm1Ipc or (involves: 129/Sv * 129S2/SvPas * C57BL/6) MGI:3844450
cx3
Hoxa9tm1Ipc/Hoxa9tm1Ipc
Hoxd9tm1Ipc/Hoxd9tm1Ipc
involves: 129/Sv * 129S2/SvPas * C57BL/6 MGI:3844451
cx4
Hoxa9tm1Ipc/Hoxa9+
Hoxd9tm1Ipc/Hoxd9+
involves: 129/Sv * 129S2/SvPas * C57BL/6 MGI:3844452
cx5
Hoxa9tm1Ipc/Hoxa9+
Hoxd9tm1Ipc/Hoxd9tm1Ipc
involves: 129/Sv * 129S2/SvPas * C57BL/6 MGI:3844454
cx6
Hoxa9tm1Ipc/Hoxa9tm1Ipc
Hoxd9tm1Ipc/Hoxd9+
involves: 129/Sv * 129S2/SvPas * C57BL/6 MGI:3844456


Genotype
MGI:3844448
hm1
Allelic
Composition
Hoxa9tm1Ipc/Hoxa9tm1Ipc
Genetic
Background
either: 129/Sv-Hoxa9tm1Ipc or (involves: 129/Sv * 129S2/SvPas * C57BL/6)
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa9tm1Ipc mutation (0 available); any Hoxa9 mutation (17 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
skeleton
• on vertebrae 21
• lumbar vertebrae are anteriorized with extra ribs on vertebrae 21 indicating an L1 to T transformation
• vertebrae 21 through 25 are anteriorized
• however, L6 is normal




Genotype
MGI:3844450
ht2
Allelic
Composition
Hoxa9tm1Ipc/Hoxa9+
Genetic
Background
either: 129/Sv-Hoxa9tm1Ipc or (involves: 129/Sv * 129S2/SvPas * C57BL/6)
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa9tm1Ipc mutation (0 available); any Hoxa9 mutation (17 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
skeleton
• 60% of mice exhibit partial, and sometimes asymmetric, rib rudiments on L1
• 60% of mice exhibit partial anteriorization with partial, and sometimes asymmetric, rib rudiments on L1
• 60% of mice exhibit unilateral or bilateral transformations of vertebrae 22 to 25




Genotype
MGI:3844451
cx3
Allelic
Composition
Hoxa9tm1Ipc/Hoxa9tm1Ipc
Hoxd9tm1Ipc/Hoxd9tm1Ipc
Genetic
Background
involves: 129/Sv * 129S2/SvPas * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa9tm1Ipc mutation (0 available); any Hoxa9 mutation (17 available)
Hoxd9tm1Ipc mutation (0 available); any Hoxd9 mutation (16 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
reproductive system
• 5 out of 11 females are sterile
• females produce small litters that often die one day after birth
• 5 out of 10 males are sterile

skeleton
• abnormal humerus morphology are visible as early as P2
• the proximal head is flattened in some mice
• in some mice the articular surface of the head is abnormal
• some mice exhibit ectopic sesamoid bones in the elbow region with 5 of 14 mice exhibiting a small supernumery bone on the lateral side, 5 of 14 mice exhibiting a supernumerary sesamoid on the medial side, and 2 of 14 mice exhibiting a large supernumerary sesamoid along the crania side of the elbow joint
• in some mice the deltoid is absent except for a distal rudiment consisting of either a small floating bone or bony protrusion in some mice the deltoid is severely truncated
• 15% to 20% shortened
• mice exhibit an extra pair of ribs on vertebra 24
• the articulation joining the ilium to the vertebral column is shifted half a vertebra
• caudal vertebrae through Ca2 are anteriorized
• mice exhibit anteriorization of L1 to T13 with an extra pair of ribs
• all lumbar vertebrae are anteriorized
• sacral vertebrae are anteriorized

limbs/digits/tail
• abnormal humerus morphology are visible as early as P2
• the proximal head is flattened in some mice
• in some mice the articular surface of the head is abnormal
• some mice exhibit ectopic sesamoid bones in the elbow region with 5 of 14 mice exhibiting a small supernumery bone on the lateral side, 5 of 14 mice exhibiting a supernumerary sesamoid on the medial side, and 2 of 14 mice exhibiting a large supernumerary sesamoid along the crania side of the elbow joint
• in some mice the deltoid is absent except for a distal rudiment consisting of either a small floating bone or bony protrusion in some mice the deltoid is severely truncated
• 15% to 20% shortened
• caudal vertebrae through Ca2 are anteriorized




Genotype
MGI:3844452
cx4
Allelic
Composition
Hoxa9tm1Ipc/Hoxa9+
Hoxd9tm1Ipc/Hoxd9+
Genetic
Background
involves: 129/Sv * 129S2/SvPas * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa9tm1Ipc mutation (0 available); any Hoxa9 mutation (17 available)
Hoxd9tm1Ipc mutation (0 available); any Hoxd9 mutation (16 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
skeleton
• some mice exhibit partial anteriorization of vertebrae 21 to 25




Genotype
MGI:3844454
cx5
Allelic
Composition
Hoxa9tm1Ipc/Hoxa9+
Hoxd9tm1Ipc/Hoxd9tm1Ipc
Genetic
Background
involves: 129/Sv * 129S2/SvPas * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa9tm1Ipc mutation (0 available); any Hoxa9 mutation (17 available)
Hoxd9tm1Ipc mutation (0 available); any Hoxd9 mutation (16 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
skeleton
• more affected than in Hoxd9tm1Ipc homozygotes
• 12% to 15% of mice exhibit a reduction in humerus length that is between that observed in Hoxd9tm1Ipc homozygotes and Hoxa9tm1Ipc Hoxd9tm1Ipc homozygotes
• 30% of mice exhibit the sum of vertebral column defects observed in Hoxd9tm1Ipc homozygotes and Hoxa9tm1Ipc heterozygotes
• 50% of mice exhibit vertebral column phenotypes observed in Hoxa9tm1Ipc Hoxd9tm1Ipc homozygotes
• 20% of mice exhibit unilateral transformation of vertebra 26 to L5, 27 to L6, and 28 to S1
• 20% of mice exhibit anteriorization of vertebra 27 to L6
• 20% of mice exhibit anteriorization of vertebra 28 and 29 to L6 and S1, respectively

limbs/digits/tail
• more affected than in Hoxd9tm1Ipc homozygotes
• 12% to 15% of mice exhibit a reduction in humerus length that is between that observed in Hoxd9tm1Ipc homozygotes and Hoxa9tm1Ipc Hoxd9tm1Ipc homozygotes




Genotype
MGI:3844456
cx6
Allelic
Composition
Hoxa9tm1Ipc/Hoxa9tm1Ipc
Hoxd9tm1Ipc/Hoxd9+
Genetic
Background
involves: 129/Sv * 129S2/SvPas * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hoxa9tm1Ipc mutation (0 available); any Hoxa9 mutation (17 available)
Hoxd9tm1Ipc mutation (0 available); any Hoxd9 mutation (16 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
skeleton
• 60% of mice exhibit vertebral column phenotypes observed in Hoxa9tm1Ipc homozygotes 40% of mice exhibit vertebral column phenotypes observed in Hoxa9tm1Ipc Hoxd9tm1Ipc homozygotes

limbs/digits/tail
N
• mice exhibit normal humerus morphology





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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory