MGI 6.24All Search Tools

All Search Tools

• Genes & Markers Query: Search for genes and genome features by symbol, name, location, gene ontology classification or phenotype.
• Batch Query: Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO).
• Multiple Genome Viewer (MGV): Compare genome features of de novo sequenced mouse strains.
• JBrowse Genome Browser: Create a graphical display of genome features from regions of the mouse genome.
• MouseMine: Access MGI data via InterMine.

• Phenotypes, Alleles & Diseases Query: Search for mutations or QTL based on phenotype, human disease, mutation type, gene, or genome location.
• Mammalian Phenotype (MP) Browser: Search or browse for a phenotype term to find relevant mutant genotypes.
• Human Disease (DO) Browser: Browse for a human disease or condition term to find mouse models. To search use the Quick Search box in the upper right corner of any MGI page.
• Human Phenotype (HPO) Browser: Search or browse for a human phenotype term to find relevant human diseases with those phenotypes.
• Human – Mouse: Disease Connection (HMDC): A translational tool designed for exploring and comparing human and mouse phenotypes and their associations with known human diseases, and to provide rapid access to mouse model resources and supporting references.

• Gene Expression Data Standard Search: Search for gene expression results using a variety of search parameters.
• Gene Expression Data Differential Expression Search: Search for genes expressed in an anatomical structure and/or developmental stage(s) but not in others.
• Gene Expression Data Profile Search: Search for genes by expression profile.
• Gene Expression Data Batch Search: Search for gene expression results using lists of genes.
• Mouse Developmental Anatomy Browser: Search or browse for anatomical structures; includes links to associated expression results.
• Gene Expression Data Matrix: Use the interactive Tissue by Stage Matrix to access detailed gene expression results.
• Gene Expression Literature Query: Search for references on gene expression during development.
• RNA-Seq and Microarray Experiment Search: Search for experiments using sample metadata annotations.

• GO Browser: Browse the Gene Ontology and mouse annotations in MGI.
• Genes & Markers Query: Search for genes using GO terms and other gene attributes.
• Batch Query: Obtain sets of MGI IDs for use in GO tools.

• Strain Query: Search for strains by name, synonyms, or attributes.
• SNP Query: Search for SNPs by strain(s), SNP attributes, genomic position, or associated genes.
• Multiple Genome Viewer (MGV): Compare genome features of de novo sequenced mouse strains.
• More

Sequences

• NCBI BLAST: Search for sequence similarity using NCBI BLAST.
• JBrowse Genome Browser: Create a graphical display of genome features from regions of the mouse genome.
• Batch Query: Download data for a batch of gene IDs or symbols.

References

• Reference Query: Search for references (with abstracts) by title, author, journal, year, or abstract.
• Gene Expression Literature Query: Search for references on gene expression during development.

Ontologies

• GO Browser: Browse the Gene Ontology and mouse annotations in MGI.
• Human Disease (DO) Browser: Browse for a human disease or condition term to find mouse models. To search use the Quick Search box in the upper right corner of any MGI page.
• Mammalian Phenotype (MP) Browser: Search or browse for a phenotype term to find relevant mutant genotypes.
• Human Phenotype (HPO) Browser: Search or browse for a human phenotype term to find relevant human diseases with those phenotypes.
• Mouse Developmental Anatomy Browser: Search or browse for anatomical structures; includes links to associated expression results.
• Adult Mouse Anatomy Browser: An extensive Stage 28 dictionary; not yet in use for annotation of expression data.

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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