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Gene Expression Data
Assay Details
Assay
Reference: J:29564 Dolle P, et al., Retinoic acid receptors and cellular retinoid binding proteins. I. A systematic study of their differential pattern of transcription during mouse organogenesis. Development. 1990 Dec;110(4):1133-51
Assay type: RNA in situ
MGI Accession ID: MGI:1342266
Gene symbol: Rarb
Gene name: retinoic acid receptor, beta
Probe: mRAR-beta
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 1: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: embryo Present Regionally restricted 1_RAR-beta
TS20: heart Absent 1_RAR-beta
TS20: fronto-nasal process mesenchyme Present Regionally restricted 1_RAR-beta Transcripts were regionally restricted to very central frontonasal mesenchymal cells located close to the brain.
TS20: tongue Present Regionally restricted 1_RAR-beta Transcripts were regionally restricted to discrete regions at the base of the tongue.
TS20: mandibular process Present Regionally restricted 1_RAR-beta

Specimen 2A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: fronto-nasal process mesenchyme Strong Regionally restricted 2A RAR-beta Transcripts were most abundant in anterior facial mesenchyme [e.g. around the eye and in the frontonasal mesenchyme].
TS17: head mesenchyme Strong Regionally restricted 2A RAR-beta Transcripts were most abundant in anterior facial mesenchyme [e.g. around the eye and in the frontonasal mesenchyme].
TS17: 1st branchial arch maxillary component Absent 2A RAR-beta
TS17: 1st branchial arch mandibular component Weak Regionally restricted 2A RAR-beta Transcripts were absent from the rostral half of the mandibular arch. There was weak labelling in the caudal half of this arch.
TS17: branchial arch Trace Regionally restricted 2A RAR-beta There was little or no labelling in arches 2 to 6.

Specimen 2B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: fronto-nasal process mesenchyme Present Regionally restricted 2B RAR-beta Transcripts were regionally restricted to very central frontonasal mesenchymal cells located close to the brain.
TS20: tongue Present Regionally restricted 2B RAR-beta Transcripts were regionally restricted to discrete regions at the base of the tongue.
TS20: mandibular process Present Regionally restricted 2B RAR-beta
TS20: oral cavity Present Regionally restricted 2B RAR-beta In the oral cavity, transcripts were detected in endoderm-derived epithelium located caudally to the pituitary anlage, while the more rostral ectoderm-derived epithelium was negative.

Specimen 2C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: submandibular gland primordium mesenchyme Present 2C RAR-beta

Specimen 3: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: molar dental lamina Present Regionally restricted 3_RAR-beta Transcripts were detected in the superficial region of the dental lamina, but not in its deeper invagination (i.e., not in the ameloblast layer).
TS22: molar mesenchyme Present Regionally restricted 3_RAR-beta Transcripts were also found in the mesenchymal dental sac that surrounds the tooth germ.

Specimen 4A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: esophagus epithelium Strong 4A RAR-beta
TS20: esophagus mesenchyme Strong Regionally restricted 4A RAR-beta Transcripts were detected in the peripheral mesenchyme of the oesophagus.
TS20: heart Absent 4A RAR-beta
TS20: fronto-nasal process mesenchyme Present Regionally restricted 4A RAR-beta Transcripts were regionally restricted to very central frontonasal mesenchymal cells located close to the brain.
TS20: tongue Present Regionally restricted 4A RAR-beta Transcripts were regionally restricted to discrete regions at the base of the tongue.
TS20: mandibular process Present Regionally restricted 4A RAR-beta
TS20: oral cavity Present Regionally restricted 4A RAR-beta In the oral cavity, transcripts were detected in endoderm-derived epithelium located caudally to the pituitary anlage, while the more rostral ectoderm-derived epithelium was negative.
TS20: trachea epithelium Strong Regionally restricted 4A RAR-beta Expression was strong in the endoderm-derived tracheal epithelium.
TS20: trachea mesenchyme Strong 4A RAR-beta

Specimen not shown: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: lung Present Regionally restricted Transcripts were found only in the epithelium of proximal bronchi, while smaller distal bronchi and the mesodermal components of the lungs were not labelled.

Specimen 4B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: lung Present Regionally restricted 4B RAR-beta Expression was detected in the epithelium of the intrapulmonary segmental bronchi, whereas the lung parenchyma, the bronchioles and alveolar ducts were not labelled.

Specimen 4C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: esophagus epithelium Strong 4C RAR-beta
TS20: esophagus mesenchyme Strong Regionally restricted 4C RAR-beta Transcripts were detected in the peripheral mesenchyme of the oesophagus.
TS20: stomach Strong Regionally restricted 4C RAR-beta Transcripts were detected in the cardiac portion of the stomach.
TS20: foregut duodenum Absent 4C RAR-beta
TS20: stomach pyloric region Absent 4C RAR-beta
TS20: midgut mesenchyme Weak Regionally restricted 4C RAR-beta Expression was weak in the peripheral mesenchyme of the midgut.
TS20: midgut epithelium Weak 4C RAR-beta
TS20: liver Absent 4C RAR-beta
TS20: intraembryonic coelom Present Regionally restricted 4C RAR-beta Transcripts were found in the diaphragm.
TS20: pancreas Present Regionally restricted 4C RAR-beta The pancreas showed a cortical, patchy expression.

Specimen 5A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: gut dorsal mesentery Present 5A RAR-beta
TS17: mesonephros Present 5A RAR-beta Diffuse expression was detected in the mesonephros.
TS17: gonad primordium Absent 5A RAR-beta Transcripts were not detected in the cells of the genital ridge.

Specimen 5B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: renal medullary interstitium Present 5B RAR-beta
TS22: adrenal gland Absent 5B RAR-beta
TS22: maturing glomerular tuft Absent 5B RAR-beta
TS22: medullary renal tubule Absent 5B RAR-beta

Specimen 6A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: midgut epithelium Weak 6A RAR-beta
TS20: midgut mesenchyme Weak Regionally restricted 6A RAR-beta Expression was weak in the peripheral mesenchyme of the midgut.
TS20: genital tubercle Present Regionally restricted 6A RAR-beta Transcripts were restricted to the proximal mesenchyme of the genital tubercle, close to the urogenital sinus, and to the allantoic mesenchyme within the umbilical cord.

Specimen not shown: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: stomach epithelium Present Regionally restricted Expression was in the cardiac region of the stomach.
TS22: esophagus epithelium Present

Specimen 6B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: anal canal Present 6B RAR-beta
TS22: gut mesenchyme Present Regionally restricted 6B RAR-beta Expression was detected in the gut outer mesenchyme layer.
TS22: genital tubercle of male Present Regionally restricted 6B RAR-beta Transcripts were restricted to the central core of the phallus.
TS22: urinary system Present Regionally restricted 6B RAR-beta Transcripts were detected in the urethral epithelium and in the prostatic mesenchyme at the base of the urinary bladder.
TS22: bladder Weak Regionally restricted 6B RAR-beta Transcripts were only weakly expressed in the bladder epithelium.

Specimen not shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: eye Absent
TS17: nasal pit Absent Transcripts were undetectable in the ectodermal component of the olfactory pits.
TS17: Rathke's pouch Present Regionally restricted The epithelium of Rathke's pouch was specifically labelled.

Specimen 7A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: pigmented retinal epithelium Present 7A RAR-beta
TS20: eye Present Regionally restricted 7A RAR-beta Transcripts were located in the vitreous body and in the condensed mesenchyme around the eye cup which will later form the choroid layer.

Specimen 7B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: inner ear mesenchyme Strong 7B RAR-beta
TS22: vestibular component epithelium Strong Regionally restricted 7B RAR-beta Expression was strong in the thickened parts of the vestibular epithelium.

Specimen 7C: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: nose Present Regionally restricted 7C RAR-beta Transcripts were present in the olfactory mesenchyme and in a limited area of the olfactory epithelium.
TS21: olfactory epithelium Present Regionally restricted 7C RAR-beta Transcripts were present in the olfactory mesenchyme and in a limited area of the olfactory epithelium.

Specimen not shown: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: nasal cavity respiratory epithelium Absent
TS21: nose Present Regionally restricted Expression was not detected in the respiratory epithelium and mesenchyme but was present in the olfactory mesenchyme and in a limited area of the olfactory epithelium.

Specimen 8A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: olfactory epithelium Present Regionally restricted 8A RAR-beta Transcripts were detected in the apical layer of the epithelium.

Specimen 8C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: stomach epithelium Present Regionally restricted 8C RAR-beta Transcripts were expressed throughout the thickness of the epithelium in the cardiac region of the stomach.

Specimen 9: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: hindlimb Present 9_RAR-beta

Specimen 10A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: adenohypophysis pars anterior Present 10A RAR-beta Transcripts were detected in cells of the pars distalis anlage and in the adjacent mesenchyme.
TS20: remnant of Rathke's pouch Weak Regionally restricted 10A RAR-beta The dorsal aspect of Rathke's pouch epithelium was very poorly labelled.
TS20: neurohypophysis Absent 10A RAR-beta

Specimen 10B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: adenohypophysis pars anterior Present Regionally restricted 10B RAR-beta Transcripts were located in the pars distalis (in both epithelium and mesenchyme).


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last database update
06/12/2024
MGI 6.13
The Jackson Laboratory