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Gene Expression Data
Assay Details
Assay
Reference: J:127119 Visel A, et al., Regulatory pathway analysis by high-throughput in situ hybridization. PLoS Genet. 2007 Oct 19;3(10):1867-83
Assay type: RNA in situ
MGI Accession ID: MGI:3767054
Gene symbol: Arx
Gene name: aristaless related homeobox
Probe: MH740 probe 657
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 5 Arx: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: tongue Present Regionally restricted 5_Arx
TS22: face Present Regionally restricted 5_Arx Expression was present in Face/Soft Tissues.
TS22: tail Strong Regionally restricted 5_Arx
TS22: forelimb Weak Regionally restricted 5_Arx
TS22: hindlimb Present Regionally restricted 5_Arx
TS22: genital tubercle Absent 5_Arx
TS22: skin Present Regionally restricted 5_Arx
TS22: lung Absent 5_Arx
TS22: metanephros Absent 5_Arx
TS22: salivary gland Absent 5_Arx
TS22: tooth Absent 5_Arx
TS22: vibrissa follicle Absent 5_Arx
TS22: esophagus Absent 5_Arx
TS22: stomach Weak Regionally restricted 5_Arx
TS22: intestine Absent 5_Arx
TS22: cochlea Absent 5_Arx
TS22: inner ear labyrinth Absent 5_Arx
TS22: olfactory epithelium Absent 5_Arx
TS22: retina Absent 5_Arx
TS22: basal forebrain Present Regionally restricted 5_Arx
TS22: piriform cortex Present Regionally restricted 5_Arx
TS22: amygdala Present Regionally restricted 5_Arx
TS22: pretectum Absent 5_Arx
TS22: dorsal root ganglion Absent 5_Arx
TS22: cranial ganglion Absent 5_Arx
TS22: corpus striatum Present Regionally restricted 5_Arx
TS22: pallidum Present Regionally restricted 5_Arx
TS22: midbrain tegmentum Strong Regionally restricted 5_Arx
TS22: spinal cord Strong Regionally restricted 5_Arx
TS22: pons Strong Regionally restricted 5_Arx
TS22: medulla oblongata Strong Regionally restricted 5_Arx
TS22: telencephalon septum Present Regionally restricted 5_Arx
TS22: thalamus Strong Regionally restricted 5_Arx
TS22: hypothalamus Strong Regionally restricted 5_Arx
TS22: cerebellum Weak Regionally restricted 5_Arx
TS22: superior colliculus Absent 5_Arx
TS22: inferior colliculus Absent 5_Arx
TS22: main olfactory bulb Present Regionally restricted 5_Arx
TS22: neocortex Present Regionally restricted 5_Arx
TS22: hippocampus Present Regionally restricted 5_Arx
TS22: ureter Absent 5_Arx
TS22: bladder Weak Regionally restricted 5_Arx
TS22: urethra Absent 5_Arx
TS22: main bronchus Absent 5_Arx
TS22: trachea Absent 5_Arx
TS22: palatal shelf Absent 5_Arx
TS22: middle ear Absent 5_Arx
TS22: pharynx Absent 5_Arx
TS22: larynx Absent 5_Arx
TS22: optic nerve Absent 5_Arx
TS22: liver Absent 5_Arx
TS22: thymus primordium Absent 5_Arx
TS22: thyroid gland Absent 5_Arx
TS22: pituitary gland Absent 5_Arx
TS22: pancreas Strong Regionally restricted 5_Arx
TS22: spleen primordium Absent 5_Arx Expression was absent in Spleen.
TS22: adrenal gland Absent 5_Arx
TS22: gonad Present Regionally restricted 5_Arx
TS22: musculature Present Regionally restricted 5_Arx Expression was present in Muscle System.
TS22: choroid plexus Weak Regionally restricted 5_Arx
TS22: meninges Weak Regionally restricted 5_Arx
TS22: blood vessel Absent 5_Arx
TS22: heart atrium Absent 5_Arx
TS22: heart ventricle Absent 5_Arx
TS22: appendicular skeleton Weak Regionally restricted 5_Arx
TS22: axial skeleton Weak Regionally restricted 5_Arx
TS22: cranium Weak Regionally restricted 5_Arx
TS22: facial bone primordium Weak Regionally restricted 5_Arx
TS22: lens Weak Regionally restricted 5_Arx

Specimen 7C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present 7C

Specimen 8D1: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Present Patchy 8D1 Expression in neurons was scattered at every level of the developing cortex, particularly in the marginal zone.
TS23: cerebral cortex marginal layer Present Patchy 8D1 Expression in neurons was scattered at every level of the developing cortex, particularly in the marginal zone.

Specimen 8D2: embryonic day 15.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Present Patchy 8D2 Expression in neurons was scattered at every level of the developing cortex, particularly in the marginal zone as in wild type.
TS23: cerebral cortex marginal layer Present Patchy 8D2 Expression in neurons was scattered at every level of the developing cortex, particularly in the marginal zone as in wild type.
TS23: cerebral cortex subventricular zone Present 8D2 A novel expression domain was detected coinciding with the subventricular zone of the mutant cortex.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
11/19/2024
MGI 6.24
The Jackson Laboratory