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Gene Expression Data
Assay Details
Assay
Reference: J:108509 Blaess S, et al., Sonic hedgehog regulates Gli activator and repressor functions with spatial and temporal precision in the mid/hindbrain region. Development. 2006 May;133(9):1799-809
Assay type: RNA in situ
MGI Accession ID: MGI:3810933
Gene symbol: Gli1
Gene name: GLI-Kruppel family member GLI1
Probe: Gli1 probe6
Probe preparation: Antisense RNA
Results
Specimen Not shown: embryonic day 8.5; Shhtm1Chg/Shhtm1Chg (more )
Structure Level Pattern Image Note
TS13: future midbrain Absent
TS13: rhombomere 1 Absent
Specimen Not shown: embryonic day 9.5; Shhtm1Chg/Shhtm1Chg (more )
Structure Level Pattern Image Note
TS15: future midbrain Absent
TS15: rhombomere 1 Absent
Specimen 5F: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future midbrain Present Regionally restricted 5F There is ventrolateral expression.
TS15: rhombomere 1 Present Regionally restricted 5F There is ventrolateral expression.
TS15: head mesenchyme Present 5F
Specimen 5G: embryonic day 9.5; Smotm2Amc/Smotm2Amc, En1tm2(cre)Wrst/En1+ (more )
Note: Conditional mutant.
Structure Level Pattern Image Note
TS15: future midbrain Absent 5G
TS15: rhombomere 1 Absent 5G
TS15: head mesenchyme Present 5G
Specimen 5H: embryonic day 9.5; Gli2tm1Alj/Gli2tm1Alj (more )
Structure Level Pattern Image Note
TS15: future midbrain Weak Regionally restricted 5H There is ventrolateral expression.
TS15: rhombomere 1 Weak Regionally restricted 5H There is ventrolateral expression.
TS15: head mesenchyme Present 5H
Specimen 5I: embryonic day 9.5; Gli2tm6Alj/Gli2tm6Alj, En1tm2(cre)Wrst/En1+ (more )
Note: Conditional mutant.
Structure Level Pattern Image Note
TS15: future midbrain Weak Regionally restricted 5I There is ventrolateral expression.
TS15: rhombomere 1 Weak Regionally restricted 5I There is ventrolateral expression.
TS15: head mesenchyme Present 5I
Specimen 5J: embryonic day 12.5; Smotm1Amc/Smotm2Amc, Tg(Nes-cre)1Kln/0 (more )
Note: Conditional mutant.
Structure Level Pattern Image Note
TS20: cerebellum primordium Absent 5J
TS20: midbrain Absent 5J
Specimen 5J inset: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cerebellum primordium Present Regionally restricted 5J inset There is ventrolateral expression.
TS20: midbrain Present Regionally restricted 5J inset There is ventrolateral expression.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/18/2025
MGI 6.24 		The Jackson Laboratory