About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:61081 Lee S, et al., Expression and regulation of a gene encoding neural recognition molecule NB-3 of the contactin/F3 subgroup in mouse brain. Gene. 2000 Mar 21;245(2):253-66
Assay type: RNA in situ
MGI Accession ID: MGI:4421769
Gene symbol: Cntn6
Gene name: contactin 6
Probe: NB-3 cDNA3
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Bodian-fixed (80% ethanol and 10% formaldehyde). The authors did not specify which probe was used to obtain the data in Table 1, the NB-3 cDNA2 (MGI:4421766) may have been used. The data in Table 1 was obtained from brains at postnatal day 1 and and 7, no differences in expression patterns were observed between these two time points.
Results
Specimen 4A: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: cortical layer II Present 4A
TS27: cortical layer III Present 4A
TS27: cortical layer V Present 4A
TS27: cerebral cortex Present Regionally restricted 4A Expression is in the subplate of the cerebral neocortex.

Specimen 4B: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: inferior colliculus Very strong 4B
TS27: locus coeruleus Very strong 4B
TS27: red nucleus Very strong 4B
TS27: trigeminal nucleus Very strong 4B

Specimen 4C: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 4C
TS28: deep cerebellar nucleus Present 4C

Specimen 4D: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: dorsal motor nucleus of vagus nerve Present 4D
TS27: hypoglossal nucleus Present 4D
TS27: inferior olivary nucleus Present 4D
TS27: trigeminal V spinal sensory nucleus Present 4D

Specimen Table 1 P1: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: accessory olfactory bulb Strong
TS27: anterior thalamic group Strong
TS27: hippocampus CA1 Strong
TS27: inferior colliculus Strong
TS27: inferior olivary nucleus Strong
TS27: piriform cortex Strong
TS27: trigeminal V mesencephalic nucleus Strong
TS27: trigeminal nucleus Strong
TS27: anterior olfactory nucleus Present
TS27: basolateral amygdaloid nucleus Present
TS27: cochlear nucleus Present
TS27: cortical layer II Present
TS27: cortical layer III Present
TS27: cortical layer V Present
TS27: deep cerebellar nucleus Present
TS27: dorsal motor nucleus of vagus nerve Present
TS27: dorsal tegmental nucleus Present
TS27: facial nucleus Present
TS27: hypoglossal nucleus Present
TS27: lateral geniculate nucleus Present
TS27: lateral reticular nucleus Present
TS27: locus coeruleus Present
TS27: medial geniculate nucleus Present
TS27: parabrachial nucleus Present
TS27: paraventricular hypothalamic nucleus Present
TS27: red nucleus Present
TS27: solitary tract nucleus Present
TS27: subiculum Present
TS27: superior colliculus Present
TS27: superior olivary nucleus Present
TS27: trigeminal V motor nucleus Present
TS27: trigeminal V spinal sensory nucleus Present
TS27: ventral posterior lateral thalamic nucleus Present
TS27: ventral posterior medial thalamic nucleus Present
TS27: ventromedial hypothalamic nucleus Present
TS27: neocortex layer Present Regionally restricted Expression is in the subplate.
TS27: amygdala Present Regionally restricted Expression is in the dorsolateral and corticomedial nuclei.
TS27: cerebellum Purkinje cell layer Present Regionally restricted Expression is in lobule 9 and 10 only.
TS27: accumbens nucleus Absent
TS27: arcuate nucleus Absent
TS27: caudate-putamen Absent
TS27: cerebellum granule cell layer Absent
TS27: cortical layer IV Absent
TS27: cortical layer VI Absent
TS27: dentate gyrus Absent
TS27: dorsomedial hypothalamic nucleus Absent
TS27: entorhinal cortex Absent
TS27: globus pallidus Absent
TS27: hippocampus CA3 Absent
TS27: lateral septal nucleus Absent
TS27: main olfactory bulb external plexiform layer Absent
TS27: main olfactory bulb glomerular layer Absent
TS27: main olfactory bulb granule cell layer Absent
TS27: main olfactory bulb mitral cell layer Absent
TS27: medial septal nucleus Absent
TS27: reticular thalamic nucleus Absent
TS27: substantia nigra Absent
TS27: supraoptic nucleus Absent
TS27: ventral tegmental area Absent

Specimen Table 1 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: accessory olfactory bulb Strong
TS28: anterior thalamic group Strong
TS28: hippocampus CA1 Strong
TS28: inferior colliculus Strong
TS28: inferior olivary nucleus Strong
TS28: piriform cortex Strong
TS28: trigeminal V mesencephalic nucleus Strong
TS28: trigeminal nucleus Strong
TS28: anterior olfactory nucleus Present
TS28: basolateral amygdaloid nucleus Present
TS28: cochlear nucleus Present
TS28: cortical layer II Present
TS28: cortical layer III Present
TS28: cortical layer V Present
TS28: deep cerebellar nucleus Present
TS28: dorsal motor nucleus of vagus nerve Present
TS28: dorsal tegmental nucleus Present
TS28: facial nucleus Present
TS28: hypoglossal nucleus Present
TS28: lateral geniculate nucleus Present
TS28: lateral reticular nucleus Present
TS28: locus coeruleus Present
TS28: medial geniculate nucleus Present
TS28: parabrachial nucleus Present
TS28: paraventricular hypothalamic nucleus Present
TS28: red nucleus Present
TS28: solitary tract nucleus Present
TS28: subiculum Present
TS28: superior colliculus Present
TS28: superior olivary nucleus Present
TS28: trigeminal V motor nucleus Present
TS28: trigeminal V spinal sensory nucleus Present
TS28: ventral posterior lateral thalamic nucleus Present
TS28: ventral posterior medial thalamic nucleus Present
TS28: ventromedial hypothalamic nucleus Present
TS28: neocortex layer Present Regionally restricted Expression is in the subplate.
TS28: amygdala Present Regionally restricted Expression is in the dorsolateral and corticomedial nuclei.
TS28: cerebellum Purkinje cell layer Present Regionally restricted Expression is in lobule 9 and 10 only.
TS28: accumbens nucleus Absent
TS28: arcuate nucleus Absent
TS28: caudate-putamen Absent
TS28: cerebellum granule cell layer Absent
TS28: cortical layer IV Absent
TS28: cortical layer VI Absent
TS28: dentate gyrus Absent
TS28: dorsomedial hypothalamic nucleus Absent
TS28: entorhinal cortex Absent
TS28: globus pallidus Absent
TS28: hippocampus CA3 Absent
TS28: lateral septal nucleus Absent
TS28: main olfactory bulb external plexiform layer Absent
TS28: main olfactory bulb glomerular layer Absent
TS28: main olfactory bulb granule cell layer Absent
TS28: main olfactory bulb mitral cell layer Absent
TS28: medial septal nucleus Absent
TS28: reticular thalamic nucleus Absent
TS28: substantia nigra Absent
TS28: supraoptic nucleus Absent
TS28: ventral tegmental area Absent


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/10/2024
MGI 6.24
The Jackson Laboratory