Gene Expression Data
Assay Details
Assay
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Reference:
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J:157819
Shimogori T, et al., A genomic atlas of mouse hypothalamic development. Nat Neurosci. 2010;13(6):767-75
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:4452073
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Gene symbol:
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Lhx9
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Gene name:
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LIM homeobox protein 9
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Probe:
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UI-M-CG0p-beo-c-08-0-UI.s1
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Probe preparation:
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Antisense labelled with fluorescein RNA
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Visualized with:
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Alkaline phosphatase
|
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Results
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Specimen
3f:
embryonic day 12.5
(more )
Note: Double labeled: brown - Lhx9; blue - Nkx2-1 (assay MGI:4450737).
Specimen
3f:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 12.5
|
Sex:
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Not Specified
|
Type:
|
section
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Fixation:
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4% Paraformaldehyde
|
Embedding:
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Cryosection
|
Note:
|
Double labeled: brown - Lhx9; blue - Nkx2-1 (assay MGI:4450737).
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: hypothalamus |
Present |
Regionally restricted |
3g
,
3f
|
Expression is present in a region ventral to the intrahypothalamic diagonal.
|
Specimen
3h:
embryonic day 12.5
(more )
Note: Double labeled: brown - Lhx9; blue - Arx (assay MGI:4450750).
Specimen
3h:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: brown - Lhx9; blue - Arx (assay MGI:4450750).
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: thalamus |
Present |
Regionally restricted |
3h
|
Expression is present in the prethalamus.
|
TS20: hypothalamus |
Present |
Regionally restricted |
3h
|
Expression is present in a region ventral to the intrahypothalamic diagonal.
|
Specimen
5a:
embryonic day 12.5
(more )
Note: Double labeled: brown - Lhx9; blue - Lhx6 (assay MGI:4450765).
Specimen
5a:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: brown - Lhx9; blue - Lhx6 (assay MGI:4450765).
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: hypothalamus |
Present |
Regionally restricted |
5a
|
Expression is present in the intrahypothalamic diagonal.
|
Specimen
5b:
embryonic day 16.5
(more )
Note: Double labeled: brown - Lhx9; blue - Lhx6 (assay MGI:4450765).
Specimen
5b:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: brown - Lhx9; blue - Lhx6 (assay MGI:4450765).
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: hypothalamus |
Present |
Regionally restricted |
5b
|
Expression is present in the intrahypothalamic diagonal.
|
Specimen
5g:
embryonic day 12.5
(more )
Note: Double labeled: brown - Lhx9; blue - Lhx8 (assay MGI:4450748).
Specimen
5g:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: brown - Lhx9; blue - Lhx8 (assay MGI:4450748).
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: hypothalamus |
Present |
Regionally restricted |
5g
|
Expression is present in the intrahypothalamic diagonal.
|
Specimen
5h:
embryonic day 16.5
(more )
Note: Double labeled: brown - Lhx9; blue - Lhx8 (assay MGI:4450748).
Specimen
5h:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: brown - Lhx9; blue - Lhx8 (assay MGI:4450748).
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: hypothalamus |
Present |
Regionally restricted |
5h
|
Expression is present in the intrahypothalamic diagonal.
|
Specimen
5k:
embryonic day 12.5
(more )
Note: Double labeled: brown - Lhx9; blue - Lhx1 (assay MGI:4450905).
Specimen
5k:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: brown - Lhx9; blue - Lhx1 (assay MGI:4450905).
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: hypothalamus |
Present |
Regionally restricted |
5k
|
Expression is present in the intrahypothalamic diagonal.
|
Specimen
5l:
embryonic day 16.5
(more )
Note: Double labeled: brown - Lhx9; blue - Lhx1 (assay MGI:4450905).
Specimen
5l:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: brown - Lhx9; blue - Lhx1 (assay MGI:4450905).
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: hypothalamus |
Present |
Regionally restricted |
5l
|
Expression is present in the intrahypothalamic diagonal.
|
|