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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827088
Gene symbol: Pcdhb9
Gene name: protocadherin beta 9
Probe: MGC clone 66841
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006303_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_01
Specimen euxassay_006303_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_02
TS23: neural retina Weak Regionally restricted euxassay_006303_02
Specimen euxassay_006303_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_03
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_03
TS23: neural retina Moderate Regionally restricted euxassay_006303_03
Specimen euxassay_006303_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_04
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_04
TS23: neural retina Moderate Regionally restricted euxassay_006303_04
Specimen euxassay_006303_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_05
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_05
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_05
TS23: neural retina Moderate Regionally restricted euxassay_006303_05
Specimen euxassay_006303_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_06
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_06
TS23: glossopharyngeal ganglion Moderate Uniform euxassay_006303_06
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_06
Specimen euxassay_006303_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_07
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_07
TS23: vagus ganglion Moderate Uniform euxassay_006303_07
TS23: vestibulo-cochlear ganglion Moderate Uniform euxassay_006303_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_07
TS23: cervical ganglion Moderate Regionally restricted euxassay_006303_07
Specimen euxassay_006303_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_08
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_08
TS23: cervical ganglion Weak Regionally restricted euxassay_006303_08
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_006303_08
Specimen euxassay_006303_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_09
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_09
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006303_09
Specimen euxassay_006303_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_10
TS23: trigeminal nerve Moderate Uniform euxassay_006303_10
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_10
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006303_10
Specimen euxassay_006303_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_11
TS23: trigeminal nerve Moderate Uniform euxassay_006303_11
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006303_11
Specimen euxassay_006303_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_12
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_12
Specimen euxassay_006303_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_13
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_13
Specimen euxassay_006303_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_14
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_14
Specimen euxassay_006303_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_15
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_15
Specimen euxassay_006303_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_006303_16
TS23: cervico-thoracic ganglion Weak Regionally restricted euxassay_006303_16
Specimen euxassay_006303_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_17
TS23: dorsal root ganglion Weak Regionally restricted euxassay_006303_17
TS23: cervical ganglion Weak Regionally restricted euxassay_006303_17
Specimen euxassay_006303_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_006303_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_18
TS23: rest of cerebellum marginal layer Moderate Regionally restricted euxassay_006303_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_18
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006303_18
TS23: trigeminal nerve Moderate Uniform euxassay_006303_18
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_18
TS23: vagus ganglion Moderate Uniform euxassay_006303_18
TS23: glossopharyngeal ganglion Moderate Uniform euxassay_006303_18
Specimen euxassay_006303_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_19
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_006303_19
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_19
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_19
Specimen euxassay_006303_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_20
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_006303_20
TS23: pons mantle layer Moderate Regionally restricted euxassay_006303_20
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_20
Specimen euxassay_006303_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006303_21
TS23: rest of cerebellum mantle layer Strong Regionally restricted euxassay_006303_21
TS23: trigeminal ganglion Strong Uniform euxassay_006303_21
Specimen euxassay_006303_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Strong Regionally restricted euxassay_006303_22
TS23: trigeminal ganglion Strong Uniform euxassay_006303_22
Specimen euxassay_006303_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_23
TS23: trigeminal ganglion Moderate Uniform euxassay_006303_23
Specimen euxassay_006303_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006303_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory