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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5422999
Gene symbol: Itsn1
Gene name: intersectin 1 (SH3 domain protein 1A)
Probe: MY7 probe 1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MY7; Specimen EX27: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_EX27_1_7D
TS22: central nervous system Strong Regionally restricted Embryo_EX27_1_7D
TS22: telencephalon Strong Regionally restricted Embryo_EX27_1_7D
TS22: cerebral cortex Strong Regionally restricted Embryo_EX27_1_7D
TS22: neocortex Strong Regionally restricted Embryo_EX27_1_7D
TS22: olfactory cortex Strong Regionally restricted Embryo_EX27_1_7B
TS22: main olfactory bulb Strong Regionally restricted Embryo_EX27_1_7B
TS22: piriform cortex Strong Regionally restricted Embryo_EX27_1_3A
TS22: hippocampus Strong Regionally restricted Embryo_EX27_1_7D
TS22: basal ganglia Moderate Regionally restricted Embryo_EX27_1_3A
TS22: corpus striatum Moderate Regionally restricted Embryo_EX27_1_3A Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Moderate Regionally restricted Embryo_EX27_1_4C
TS22: amygdala Moderate Regionally restricted Embryo_EX27_1_8D
TS22: telencephalon septum Moderate Regionally restricted Embryo_EX27_1_6A
TS22: pallidum Absent Expression was not detected in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_EX27_1_5B
TS22: thalamus Strong Regionally restricted Embryo_EX27_1_3A
TS22: hypothalamus Strong Regionally restricted Embryo_EX27_1_5B
TS22: midbrain Strong Regionally restricted Embryo_EX27_1_5A
TS22: pretectum Moderate Regionally restricted Embryo_EX27_1_5A
TS22: superior colliculus Strong Regionally restricted Embryo_EX27_1_5A
TS22: inferior colliculus Moderate Regionally restricted Embryo_EX27_1_5A
TS22: midbrain tegmentum Moderate Regionally restricted Embryo_EX27_1_6A
TS22: hindbrain Moderate Regionally restricted Embryo_EX27_1_3A
TS22: cerebellum Moderate Regionally restricted Embryo_EX27_1_3A
TS22: pons Moderate Regionally restricted Embryo_EX27_1_3A
TS22: medulla oblongata Moderate Regionally restricted Embryo_EX27_1_4B
TS22: spinal cord Strong Regionally restricted Embryo_EX27_1_6A
TS22: choroid plexus Moderate Regionally restricted Embryo_EX27_1_7B
TS22: meninges Absent
TS22: peripheral nervous system Moderate Regionally restricted Embryo_EX27_1_4B
TS22: cranial ganglion Moderate Regionally restricted Embryo_EX27_1_3C
TS22: dorsal root ganglion Moderate Regionally restricted Embryo_EX27_1_4B
TS22: eye Strong Regionally restricted Embryo_EX27_1_1A
TS22: retina Strong Regionally restricted Embryo_EX27_1_1D
TS22: lens Strong Regionally restricted Embryo_EX27_1_1A
TS22: cornea Strong Regionally restricted Embryo_EX27_1_1A
TS22: optic nerve Absent
TS22: nose Moderate Regionally restricted Embryo_EX27_1_5A
TS22: olfactory epithelium Moderate Regionally restricted Embryo_EX27_1_5A
TS22: ear Moderate Regionally restricted Embryo_EX27_1_7B
TS22: inner ear Moderate Regionally restricted Embryo_EX27_1_7B
TS22: cochlea Moderate Regionally restricted Embryo_EX27_1_7B
TS22: inner ear labyrinth Weak Regionally restricted Embryo_EX27_1_2A
TS22: middle ear Absent
TS22: alimentary system Moderate Regionally restricted Embryo_EX27_1_7A Expression was detected in the digestive system.
TS22: intestine Weak Regionally restricted Embryo_EX27_1_6A
TS22: salivary gland Moderate Regionally restricted Embryo_EX27_1_4B
TS22: tongue Moderate Regionally restricted Embryo_EX27_1_7A
TS22: tooth Absent
TS22: palatal shelf Absent
TS22: esophagus Weak Regionally restricted Embryo_EX27_1_6A
TS22: stomach Weak Regionally restricted Embryo_EX27_1_8D
TS22: liver Absent
TS22: respiratory system Weak Regionally restricted Embryo_EX27_1_8A
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Weak Regionally restricted Embryo_EX27_1_8A
TS22: urinary system Moderate Regionally restricted Embryo_EX27_1_7A Expression was detected in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_EX27_1_4C
TS22: ureter Absent
TS22: bladder Weak Regionally restricted Embryo_EX27_1_6A
TS22: urethra Weak Regionally restricted Embryo_EX27_1_6C
TS22: reproductive system Moderate Regionally restricted Embryo_EX27_1_7A
TS22: genital tubercle Moderate Regionally restricted Embryo_EX27_1_7A
TS22: gonad Absent
TS22: gland Weak Regionally restricted Embryo_EX27_1_5A Expression was weak in the endocrine system.
TS22: thyroid gland Weak Regionally restricted Embryo_EX27_1_5A
TS22: pituitary gland Absent
TS22: pancreas Absent
TS22: adrenal gland Weak Regionally restricted Embryo_EX27_1_8A
TS22: cardiovascular system Weak Regionally restricted Embryo_EX27_1_5A
TS22: heart Weak Regionally restricted Embryo_EX27_1_5A
TS22: heart atrium Weak Regionally restricted Embryo_EX27_1_5A
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Weak Regionally restricted Embryo_EX27_1_5A Expression was weak in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Weak Regionally restricted Embryo_EX27_1_5A
TS22: appendicular skeleton Weak Regionally restricted Embryo_EX27_1_2A Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Weak Regionally restricted Embryo_EX27_1_2A
TS22: face Moderate Regionally restricted Embryo_EX27_1_5A Expression was detected in the face/soft tissues.
TS22: facial bone primordium Weak Regionally restricted Embryo_EX27_1_4A
TS22: cranium Weak Regionally restricted Embryo_EX27_1_6A Expression was weak in the skull (base and vault).
TS22: axial skeleton Weak Regionally restricted Embryo_EX27_1_5A
TS22: tail Moderate Regionally restricted Embryo_EX27_1_6A
TS22: forelimb Moderate Regionally restricted Embryo_EX27_1_1A
TS22: hindlimb Moderate Regionally restricted Embryo_EX27_1_2D
TS22: integumental system Moderate Regionally restricted Embryo_EX27_1_7A
TS22: skin Moderate Regionally restricted Embryo_EX27_1_7A
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/17/2024
MGI 6.24 		The Jackson Laboratory