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Gene Expression Data
Assay Details
Assay
Reference: J:36483 Flenniken AM, et al., Distinct and overlapping expression patterns of ligands for Eph-related receptor tyrosine kinases during mouse embryogenesis. Dev Biol. 1996 Nov 1;179(2):382-401
Assay type: RNA in situ
MGI Accession ID: MGI:5490998
Gene symbol: Efnb1
Gene name: ephrin B1
Probe: Elk-L cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 5A: embryonic day 7.5 (more )
Note: 2-3 somites.
Structure Level Pattern Image Note
TS11: future brain Present Regionally restricted 5A A broad domain of expression was seen in the presumptive hind- and midbrain.

Specimen 5B: embryonic day 8.0 (more )
Note: 4-5 somites. flat mount
Structure Level Pattern Image Note
TS12: future hindbrain Present Regionally restricted 5B Expression is in the anterior hindbrain.
TS12: future midbrain Present 5B
TS12: rhombomere Present 5B Rhombomere 4.

Specimen 5C: embryonic day 8.5 (more )
Note: 7 somites.
Structure Level Pattern Image Note
TS13: future hindbrain Present Regionally restricted 5C Expression is in the anterior hindbrain.
TS13: future midbrain Present Regionally restricted 5C
TS13: rhombomere 4 Present Regionally restricted 5C

Specimen 5D: embryonic day 8.5 (more )
Note: 7 to 8 somites. flat mount
Structure Level Pattern Image Note
TS13: future midbrain Present 5D
TS13: rhombomere 2 Present 5D
TS13: rhombomere 4 Present 5D

Specimen 5E: embryonic day 9.0 (more )
Note: 12 somites.
Structure Level Pattern Image Note
TS14: future midbrain Strong Regionally restricted 5E Expression is at the dorsal midbrain.
TS14: rhombomere 1 Strong 5E
TS14: rhombomere Present Regionally restricted 5E Expression is at the rhombomere boundaries.

Specimen 5F: embryonic day 9.5-10.0 (more )
Structure Level Pattern Image Note
TS15: neural tube roof plate Strong 5F
TS15: branchial arch Present 5F
TS15: limb Present 5F
TS15: somite Present Regionally restricted 5F Ventral somite.
TS15: future hindbrain Weak 5F
TS15: telencephalon Weak 5F
TS15: diencephalon Weak Regionally restricted 5F Dorsal diencephalon.
TS15: future midbrain Absent 5F

Specimen 7A: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: forelimb bud Present Regionally restricted 7A Expression is in the distal posterior region.

Specimen 7B: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forelimb bud Strong Regionally restricted 7B Expression is stronger in the posterior region.

Specimen 7C: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: forelimb bud Present Regionally restricted 7C Expression is at the distal edge and in an arc orthogonal to the proximal-distal axis that was broad at the anterior edge and narrowed towards the center of the limb and in a central region.

Specimen 7D: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: footplate Present Regionally restricted 7D Expression is in an arc of cells that spanned the anterior-posterior axis of the hand/footplate. (Authors did not specify hand or foot is shown)
TS19: handplate Present Regionally restricted 7D Expression is in an arc of cells that spanned the anterior-posterior axis of the hand/footplate. (Authors did not specify hand or foot is shown)

Specimen 7E: embryonic day 12.0-12.5 (more )
Structure Level Pattern Image Note
TS20: forelimb Present Regionally restricted 7E Upregulation over the whole proximal forelimb with radiating rays. Expression is at the edge, less at the interdigital zone.
TS20: hand Present Regionally restricted 7E Upregulation over the whole proximal forelimb with radiating rays. Expression is at the edge, less at the interdigital zone.

Specimen 7F: embryonic day 12.0-12.5 (more )
Structure Level Pattern Image Note
TS20: foot Present Regionally restricted 7F Expression is in two oval domains on the ventral side of the limb at the base of the paddle.
TS20: forelimb Present Regionally restricted 7F Expression is in two oval domains on the ventral side of the limb at the base of the paddle.
TS20: hand Present Regionally restricted 7F Expression is in two oval domains on the ventral side of the limb at the base of the paddle.
TS20: hindlimb Present Regionally restricted 7F Expression is in two oval domains on the ventral side of the limb at the base of the paddle.

Specimen 7G: embryonic day 14.0 (more )
Structure Level Pattern Image Note
TS22: foot Present Regionally restricted 7G Over the entire foot/handplate and outlining the developing tendons. (Authors did not specify hand or foot is shown)
TS22: hand Present Regionally restricted 7G Over the entire foot/handplate and outlining the developing tendons. (Authors did not specify hand or foot is shown)
TS22: limb digit Present Regionally restricted 7G Expression is at the tips.

Specimen 7H: embryonic day 14.0 (more )
Structure Level Pattern Image Note
TS22: foot Present Regionally restricted 7H Over the entire foot/handplate and outlining the developing tendons. (Authors did not specify hand or foot is shown)
TS22: hand Present Regionally restricted 7H Over the entire foot/handplate and outlining the developing tendons. (Authors did not specify hand or foot is shown)
TS22: limb digit Present Regionally restricted 7H Expression is at the tips.

Specimen not shown: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: limb digit Present Regionally restricted Expression is at the tips.

Specimen 9A: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: dorsal root ganglion Present 9A
TS21: spinal cord floor plate Present 9A
TS21: spinal cord ventricular layer Present Non-Uniform 9A Higher levels dorsally.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
06/12/2024
MGI 6.13
The Jackson Laboratory