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Gene Expression Data
Assay Details
Assay
Reference: J:38926 Ng LJ, et al., SOX9 binds DNA, activates transcription, and coexpresses with type II collagen during chondrogenesis in the mouse. Dev Biol. 1997 Mar 1;183(1):108-21
Assay type: RNA in situ
MGI Accession ID: MGI:5496698
Gene symbol: Col2a1
Gene name: collagen, type II, alpha 1
Probe: pNJ61
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 3B: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: primitive endoderm Present Regionally restricted 3B Expression was restricted to a small patch in the anterior region.

Specimen 3D: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: heart Strong Regionally restricted 3D Expression was detected in cardiogenic mesoderm.
TS13: notochord Present 3D Coexpression with Sox9 was noted.
TS13: head paraxial mesenchyme Present 3D
TS13: head mesenchyme derived from neural crest Weak 3D

Specimen 3F: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: trunk sclerotome Present Regionally restricted 3F Expression was detected in the sclerotome of the lower trunk somites. Coexpression with Sox9 was noted.

Specimen 3H: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: vertebral pre-cartilage condensation Present Regionally restricted 3H Expression was detected in the mesenchymal condensation for prevertebrae.

Specimen 3J: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: metatarsus mesenchyme Present Regionally restricted 3J Expression was detected in the chondrogenic mass of the tarsals and metatarsals.
TS23: tarsus Present Regionally restricted 3J Expression was detected in the chondrogenic mass of the tarsals and metatarsals.

Specimen 3L: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: vertebral cartilage condensation Present Regionally restricted 3L Expression was detected in chondrocytes of the lower trunk vertebrae. Coexpression with Sox9 was noted.
TS22: intervertebral disc Weak 3L There was a diminished level of expression in the intervertebral tissues. Coexpression with Sox9 was noted.

Specimen 3N: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: basioccipital bone Strong Regionally restricted 3N Expression was stronger in proliferating chondrocytes of the basioccipital bone. Expression was diminished in hypertrophic chondrocytes.

Specimen not shown E8.5: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: future prosencephalon Present
TS13: gut Present
TS13: heart Present
TS13: otic placode Present
TS13: somite Present
TS13: neural ectoderm Present Regionally restricted Expression was detected in the neural tube.

Specimen not shown E9.5: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: branchial arch Present
TS15: future forebrain Present
TS15: gut Present
TS15: head mesenchyme Present
TS15: heart Present
TS15: somite Present
TS15: central nervous system Present Regionally restricted Expression was detected in the neural tube.

Specimen not shown E10.5: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: branchial arch Present
TS17: forebrain ventricular layer Present
TS17: gut Present
TS17: head mesenchyme Present
TS17: heart Present
TS17: hindbrain ventricular layer Present
TS17: limb mesenchyme Present
TS17: midbrain ventricular layer Present
TS17: notochord Present
TS17: otocyst Present
TS17: somite Present
TS17: central nervous system Present Regionally restricted Expression was detected in the neural tube.
TS17: respiratory system Present Regionally restricted Expression was detected in larynx and bronchial cartilage.

Specimen not shown E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: inner ear epithelium Present Regionally restricted Transcripts were detected in sensory epithelium of the inner ear.
TS19: branchial arch Present
TS19: gut Present
TS19: head mesenchyme Present
TS19: jaw primordium Present
TS19: limb mesenchyme Present
TS19: notochord Present
TS19: somite Present
TS19: central nervous system Present Regionally restricted Expression was detected in the neural tube.
TS19: respiratory system Present Regionally restricted Expression was detected in larynx and bronchial cartilage.

Specimen not shown E12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: respiratory system Present Expression was detected in bronchopulmonary tissues, larynx, and bronchial cartilage.
TS20: cranium Present
TS20: gut Present
TS20: head mesenchyme Present
TS20: heart Present
TS20: inner ear Present
TS20: jaw primordium Present
TS20: limb mesenchyme Present
TS20: notochord Present
TS20: somite Present
TS20: central nervous system Present Regionally restricted Expression was detected in the neural tube.

Specimen not shown E13.5: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: cranium Present Uniform
TS21: facial bone primordium Present
TS21: head mesenchyme Present
TS21: heart Present
TS21: inner ear Present
TS21: jaw Present
TS21: jaw skeleton Present
TS21: limb mesenchyme Present
TS21: notochord Present
TS21: somite Present
TS21: respiratory system Present Expression was detected in bronchopulmonary tissues, larynx, and bronchial cartilage.
TS21: central nervous system Present Regionally restricted Expression was detected in the neural tube.

Specimen not shown E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cranium Present
TS22: head mesenchyme Present
TS22: inner ear Present
TS22: jaw Present
TS22: larynx Present
TS22: limb mesenchyme Present
TS22: somite Present
TS22: central nervous system Present Regionally restricted Expression was detected in the neural tube.

Specimen not shown E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cranium Present
TS23: head mesenchyme Present
TS23: inner ear Present
TS23: jaw Present
TS23: larynx Present
TS23: limb mesenchyme Present
TS23: limb skeleton Present
TS23: main bronchus cartilage Present
TS23: vertebra Present
TS23: central nervous system Present Regionally restricted Expression was detected in the neural tube.

Specimen not shown E16.5: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cranium Present
TS24: forebrain ventricular layer Present
TS24: head mesenchyme Present
TS24: hindbrain ventricular layer Present
TS24: inner ear Present
TS24: jaw Present
TS24: larynx Present
TS24: limb mesenchyme Present
TS24: limb skeleton Present
TS24: main bronchus cartilage Present
TS24: midbrain ventricular layer Present
TS24: vertebra Present
TS24: central nervous system Present Regionally restricted Expression was detected in the neural tube.

Specimen not shown E17.5: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cranium Present
TS25: head mesenchyme Present
TS25: jaw Present
TS25: larynx Present
TS25: limb mesenchyme Present
TS25: limb skeleton Present
TS25: main bronchus cartilage Present
TS25: skeleton Present
TS25: vertebra Present
TS25: inner ear epithelium Present Regionally restricted Transcripts were detected in sensory epithelium of the inner ear.

Specimen not shown E18.5: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cranium Present
TS26: head mesenchyme Present
TS26: jaw Present
TS26: larynx Present
TS26: limb mesenchyme Present
TS26: limb skeleton Present
TS26: main bronchus cartilage Present
TS26: skeleton Present
TS26: vertebra Present

Specimen 6B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: neural tube Weak 6B
TS15: sclerotome Strong 6B
TS15: notochord Present 6B

Specimen 6D: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: otocyst epithelium Present 6D

Specimen 6F: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: hindbrain roof plate Present 6F
TS19: hindbrain ventricular layer Present 6F

Specimen 6H: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: ventricle cardiac muscle Present Regionally restricted 6H Expression was detected in the ventricular epimyocardium.
TS19: interatrial septum Present Regionally restricted 6H Expression was detected in the interatrial region epimyocardium.
TS19: branchial arch mesenchyme Strong 6H Expression was detected adjacent to the arch artery.
TS19: branchial pouch Present 6H Expression was detected adjacent to the arch artery.

Specimen Table 2 - 7.5: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: ectoplacental cone Absent
TS11: primitive endoderm Present Regionally restricted Expression was detected in visceral endoderm over cardiogenic mesoderm.

Specimen Table 2 - 11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: intestine Absent Expression was absent from the intestine mucosa.
TS19: umbilical cord Absent

Specimen Table 2 - 12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: bronchus epithelium Present
TS20: lung mesenchyme Absent
TS20: umbilical cord Absent
TS20: urogenital ridge Absent Expression was absent in genital ridge mesenchyme.
TS20: metanephros Ambiguous Regionally restricted The table indicated staining in metanephric tubules as +/-.

Specimen Table 2 - 14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: pancreas Present Regionally restricted Expression was detected in islets but not ductal epithelium.
TS22: genital tubercle Absent Expression was absent in genital tubercle mesenchyme.

Specimen Table 2 - 16.5: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: intestine mucosa Absent
TS24: intestine Present Regionally restricted Expression was detected in the intestine submucosa.

Specimen Table 2 - 17.5: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cornea Present


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
09/17/2024
MGI 6.24
The Jackson Laboratory