About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:186285 Lefkovics K, et al., Comparative analysis of type II classic cadherin mRNA distribution patterns in the developing and adult mouse somatosensory cortex and hippocampus suggests significant functional redundancy. J Comp Neurol. 2012 May 1;520(7):1387-1405
Assay type: RNA in situ
MGI Accession ID: MGI:7492295
Gene symbol: Cdh6
Gene name: cadherin 6
Probe: Cad6 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 4A: embryonic day 14.0 (more )
Structure Level Pattern Image Note
TS22: hippocampus Present Regionally restricted 4A Expressed in the preplate. Summarized in Table 3.
Specimen 4B: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: hippocampus Present Regionally restricted 4B Expressed in the hippocampal plate (the future pyramidal cell layer). High expression in the marginal zone.
Specimen 4C: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: subiculum Very strong 4C
TS27: dentate gyrus Absent 4C
TS27: hippocampus pyramidal cell layer Absent 4C
TS27: hippocampus molecular layer Present 4C Summarized in Table 3.
TS27: hippocampus stratum lacunosum Present 4C Summarized in Table 3.
Specimen 6A1: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Single cells 6A1 Expressed only in a few cells.
TS28: CA1 pyramidal cell layer Strong 6A1
TS28: hippocampus stratum radiatum Present 6A1
Specimen 6A2: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Single cells 6A2 Expressed only in a few cells.
TS28: CA1 pyramidal cell layer Strong 6A2
TS28: hippocampus stratum radiatum Absent 6A2
Specimen 6A3: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Present 6A3
TS28: hippocampus stratum lucidum Present 6A3
Specimen 6A4: postnatal adult (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Strong 6A4
TS28: hippocampus stratum lucidum Present 6A4
Specimen 6A5: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Trace 6A5 Barely detectable.
TS28: dentate gyrus hilus Present 6A5
Specimen 6A6: postnatal adult (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Trace 6A6 Barely detectable.
TS28: dentate gyrus hilus Present 6A6
Specimen 8A: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum radiatum Present 8A
Specimen 9A1: embryonic day 14.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS22: cerebral cortex marginal layer Present 9A1
TS22: cerebral cortex ventricular layer Present 9A1
TS22: cortical plate Present 9A1
TS22: cerebral cortex intermediate zone Absent 9A1
TS22: cerebral cortex subventricular zone Absent 9A1
TS22: cortical subplate Absent 9A1
Specimen 9A2: embryonic day 16.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS24: cerebral cortex ventricular layer Present 9A2
TS24: cortical plate Present 9A2
TS24: cerebral cortex intermediate zone Absent 9A2
TS24: cerebral cortex marginal layer Absent 9A2
TS24: cerebral cortex subventricular zone Absent 9A2
TS24: cortical subplate Absent 9A2
Specimen 9A3: embryonic day 18.0 (more )
Structure Level Pattern Image Note
TS26: cerebral cortex ventricular layer Present 9A3
TS26: cerebral cortex marginal zone Absent 9A3
Specimen 9A4: postnatal day 1 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS27: cerebral cortex intermediate zone Absent 9A4
TS27: cortical layer I Absent 9A4
TS27: cortical layer II Present 9A4
TS27: cortical layer III Present 9A4
TS27: cortical layer IV Present 9A4
TS27: cortical layer V Present 9A4
TS27: cortical layer VI Present 9A4
TS27: cortical subplate Present 9A4
Specimen 9A5: postnatal day 10 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cerebral hemisphere white matter Absent 9A5
TS28: cortical layer I Absent 9A5
TS28: cortical layer VI Absent 9A5
TS28: cortical layer II Present 9A5
TS28: cortical layer III Present 9A5
TS28: cortical layer IV Present 9A5
TS28: cortical layer V Present 9A5
TS28: cortical subplate Present 9A5
Specimen 9A6: postnatal adult (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cerebral hemisphere white matter Absent 9A6
TS28: cortical layer I Absent 9A6
TS28: cortical layer II Present 9A6
TS28: cortical layer III Present 9A6
TS28: cortical layer IV Present 9A6
TS28: cortical layer V Present 9A6
TS28: cortical layer VI Present 9A6
TS28: cortical subplate Present 9A6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory