Gene Expression Data
Assay Details
Assay
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Reference:
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J:63172
Erskine L, et al., Retinal ganglion cell axon guidance in the mouse optic chiasm: expression and function of robos and slits. J Neurosci. 2000 Jul 1;20(13):4975-82
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:7565490
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Gene symbol:
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Slit2
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Gene name:
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slit guidance ligand 2
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Probe:
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Slit2 cDNA
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Results
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Specimen
2E:
embryonic day 12.5
(more )
Note: vibratome section
Specimen
2E:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 12.5
|
Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Note:
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vibratome section
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Specimen
2J:
embryonic day 14.5
(more )
Note: vibratome section
Specimen
2J:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
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section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Cell Type |
Level |
Pattern |
Image |
Note |
TS22: retina |
retinal ganglion cell |
Present |
Regionally restricted |
2J
|
Expressed throughout retinal ganglion cell layer. Expressed by most cells in the layer.
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Specimen
2O/R:
embryonic day 17.5
(more )
Note: vibratome section
Specimen
2O/R:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 17.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS25: retina layer |
Present |
Regionally restricted |
2R
,
2O
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Expressed at the inner nuclear layer.
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Specimen
3Q:
embryonic day 12.5
(more )
Note: vibratome section
Specimen
3Q:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: diencephalon |
Strong |
Regionally restricted |
3Q
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Expressed at the ventral midline in the region in which the axons enter the brain and turn to grow ventrally, including the position of the glial knot, a glial structure at the midline of the diencephalon that has been proposed to delimit the pathway of the ingrowing axons.
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Specimen
3R:
embryonic day 12.5
(more )
Note: vibratome section
Specimen
3R:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: diencephalon |
Strong |
Regionally restricted |
3R
|
Expressed at the ventral midline in the region in which the axons enter the brain and turn to grow ventrally.
|
Specimen
3S:
embryonic day 12.5
(more )
Note: vibratome section
Specimen
3S:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: diencephalon |
Strong |
Regionally restricted |
3S
|
Expressed at the ventral midline in the region in which the axons enter the brain and turn to grow ventrally (see 3Q and 3R).
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Specimen
3T:
embryonic day 12.5
(more )
Note: vibratome section
Specimen
3T:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 12.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS20: diencephalon |
Strong |
Regionally restricted |
3T
|
Expressed at the ventral midline in the region in which the axons enter the brain and turn to grow ventrally (see 3Q and 3R).
|
Specimen
4Q:
embryonic day 14.5
(more )
Note: vibratome section
Specimen
4Q:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
4Q
|
Expression was maintained at the ventral midline, in a region directly dorsal to the site of axon divergence.
|
Specimen
4R:
embryonic day 14.5
(more )
Note: vibratome section
Specimen
4R:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
4R
|
Expression was maintained at the ventral midline, in a region directly dorsal to the site of axon divergence.
|
Specimen
4S:
embryonic day 14.5
(more )
Note: vibratome section
Specimen
4S:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
4S
|
Expression was maintained at the ventral midline, in a region directly dorsal to the site of axon divergence. No expression at the more ventral level at which the axons cross the midline.
|
Specimen
4T:
embryonic day 14.5
(more )
Note: vibratome section
Specimen
4T:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
4T
|
Expression was maintained at the ventral midline, in a region directly dorsal to the site of axon divergence. No expression at the more ventral level at which the axons cross the midline.
|
Specimen
4W:
embryonic day 14.5
(more )
Note: vibratome section
Specimen
4W:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
4W
|
Expression was maintained at the ventral midline, in a region directly dorsal to the site of axon divergence. Expressed by a subset of the midline radial glial cells (compared with 4V).
|
Specimen
5E:
embryonic day 17.5
(more )
Note: vibratome section
Specimen
5E:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 17.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Level |
Pattern |
Image |
Note |
TS25: diencephalon |
Present |
Regionally restricted |
5E
|
Expression was maintained at the ventral midline, in a region directly dorsal to the site of axon divergence. No expression at the more ventral level at which the axons cross the midline.
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Specimen
not shown:
embryonic day 15.5
(more )
Note: vibratome section
Specimen
not shown:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 15.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Note:
|
vibratome section
|
Structure |
Cell Type |
Level |
Pattern |
Image |
Note |
TS23: retina layer |
retinal ganglion cell |
Present |
Regionally restricted |
|
Expressed throughout retinal ganglion cell layer.
|
TS23: diencephalon |
|
Present |
Regionally restricted |
|
Expression was maintained at the ventral midline, in a region directly dorsal to the site of axon divergence. No expression at the more ventral level at which the axons cross the midline.
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