Gene Expression Data
Assay Details
Assay
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Reference:
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J:336866
Puelles L, et al., The Midbrain Preisthmus: A Poorly Known Effect of the Isthmic Organizer. Int J Mol Sci. 2023 Jun 5;24(11)
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:7664428
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Gene symbol:
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Id4
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Gene name:
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inhibitor of DNA binding 4
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Probe:
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Id4_riboprobe3
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Visualized with:
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Alkaline phosphatase
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Assay notes:
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The authors analyzed data from the Allen Developing Mouse Brain.
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Results
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Specimen
2r:
embryonic day 11.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
2r:
(close )
Genetic Background:
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C57BL/6J
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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Fresh Frozen
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Embedding:
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Cryosection
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Note:
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Sample was postfixed in 4% paraformaldehyde.
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Structure |
Level |
Pattern |
Image |
Note |
TS19: midbrain |
Present |
Regionally restricted |
2r
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Expression was detected in the rostral midbrain, but left a caudal midbrain gap devoid of signal, which may correspond to the prospective mesomere 2 (m2).
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TS19: midbrain-hindbrain junction |
Present |
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2r
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TS19: metencephalon |
Present |
Regionally restricted |
2r
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Expression was detected in the rostral hindbrain.
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Specimen
7s:
embryonic day 15.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
7s:
(close )
Genetic Background:
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C57BL/6J
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Age:
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embryonic day 15.5
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Sex:
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Male
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Type:
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section
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Fixation:
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Fresh Frozen
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Embedding:
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Cryosection
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Note:
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Sample was postfixed in 4% paraformaldehyde.
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Structure |
Level |
Pattern |
Image |
Note |
TS23: midbrain |
Present |
Regionally restricted |
7s
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Expression was detected in the preisthmus and showed a curved boundary with the isthmus, with development of a marked convexity towards the midbrain.
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Specimen
13h:
postnatal day 4
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
13h:
(close )
Genetic Background:
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C57BL/6J
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Age:
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postnatal day 4
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Sex:
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Male
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Type:
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section
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Fixation:
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Fresh Frozen
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Embedding:
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Cryosection
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Note:
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Sample was postfixed in 4% paraformaldehyde.
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Structure |
Level |
Pattern |
Image |
Note |
TS28: periaqueductal grey |
Present |
Regionally restricted |
13h
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Selective labeling of the preisthmic patches of periaqueductal gray was observed.
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