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Gene Expression Data
Assay Details
Assay
Reference: J:336866 Puelles L, et al., The Midbrain Preisthmus: A Poorly Known Effect of the Isthmic Organizer. Int J Mol Sci. 2023 Jun 5;24(11)
Assay type: RNA in situ
MGI Accession ID: MGI:7664438
Gene symbol: Sall3
Gene name: spalt like transcription factor 3
Probe: Sall3_riboprobe
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: The authors analyzed data from the Allen Developing Mouse Brain.
Results
Specimen 3a: embryonic day 11.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS19: midbrain ventricular layer Present Regionally restricted 3a The caudal sulcal ventricular zone of the midbrain appears densely labeled by the Sall3 signal at several lateromedial parasagittal section levels.
TS19: midbrain mantle layer Present Regionally restricted 3a Expression was detected in more rostral basal mantle elements in m1 (mesomere 1).
Specimen 3b: embryonic day 11.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS19: midbrain ventricular layer Present Regionally restricted 3b The caudal sulcal ventricular zone of the midbrain appears densely labeled by the Sall3 signal at several lateromedial parasagittal section levels.
TS19: midbrain mantle layer Present Regionally restricted 3b Expression was detected in more rostral basal mantle elements in m1 (mesomere 1).
TS19: midbrain-hindbrain junction Absent 3b
Specimen 3c: embryonic day 11.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS19: midbrain ventricular layer Present Regionally restricted 3c The caudal sulcal ventricular zone of the midbrain appears densely labeled by the Sall3 signal at several lateromedial parasagittal section levels.
TS19: midbrain mantle layer Present Regionally restricted 3c Expression was detected in more rostral basal mantle elements in m1 (mesomere 1).
TS19: midbrain-hindbrain junction Absent 3c
Specimen 3d: embryonic day 11.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS19: midbrain ventricular layer Present Regionally restricted 3d The caudal sulcal ventricular zone of the midbrain appears densely labeled by the Sall3 signal at several lateromedial parasagittal section levels.
TS19: midbrain mantle layer Present Regionally restricted 3d Expression was detected in more rostral basal mantle elements in m1 (mesomere 1).
TS19: midbrain-hindbrain junction Absent 3d
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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10/09/2024
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