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Gene Expression Data
Assay Details
Assay
Reference: J:336866 Puelles L, et al., The Midbrain Preisthmus: A Poorly Known Effect of the Isthmic Organizer. Int J Mol Sci. 2023 Jun 5;24(11)
Assay type: RNA in situ
MGI Accession ID: MGI:7665224
Gene symbol: Foxp2
Gene name: forkhead box P2
Probe: Foxp2_riboprobe
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: The authors analyzed data from the Allen Developing Mouse Brain.
Results
Specimen 8e: embryonic day 15.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS23: inferior colliculus Present Graded 8e A deep to superficial gradiental labeling of the inferior colliculus primordium was observed.
TS23: superior colliculus Weak 8e
TS23: midbrain Weak Regionally restricted 8e Weak signal was detected at the intermediate stratum of the preisthmic mantle, caudal to the inferior colliculus.

Specimen 8f: embryonic day 15.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS23: inferior colliculus Present Graded 8f A deep to superficial gradiental labeling of the inferior colliculus primordium was observed.
TS23: superior colliculus Weak 8f
TS23: midbrain Weak Regionally restricted 8f Weak signal was detected at the intermediate stratum of the preisthmic mantle, caudal to the inferior colliculus.

Specimen 8g: embryonic day 15.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS23: inferior colliculus Present Graded 8g A deep to superficial gradiental labeling of the inferior colliculus primordium was observed.
TS23: superior colliculus Weak 8g
TS23: midbrain Weak Regionally restricted 8g Weak signal was detected at the intermediate stratum of the preisthmic mantle, caudal to the inferior colliculus.

Specimen 8h: embryonic day 15.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS23: inferior colliculus Present Graded 8h A deep to superficial gradiental labeling of the inferior colliculus primordium was observed.
TS23: superior colliculus Weak 8h
TS23: midbrain Weak Regionally restricted 8h Weak signal was detected at the intermediate stratum of the preisthmic mantle, caudal to the inferior colliculus.
TS23: midbrain-hindbrain junction Present Regionally restricted 8h The positive patch at the left bottom corner of the figure is an unidentified superficial isthmic mass.

Specimen 10a: embryonic day 18.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS26: inferior colliculus Strong 10a A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
TS26: superior colliculus Present Regionally restricted 10a Expression was detected in multiple layers in the superior colliculus.
TS26: midbrain Strong Regionally restricted 10a Signal was strong in the inferior colliculus. Signal was detected in the superior colliculus and the mantle of the toral bulges. Signal was not detected in the intercollicular area.

Specimen 10b: embryonic day 18.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS26: inferior colliculus Strong 10b A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
TS26: superior colliculus Present Regionally restricted 10b Expression was detected in multiple layers in the superior colliculus.
TS26: midbrain Strong Regionally restricted 10b Signal was strong in the inferior colliculus. Signal was detected in the superior colliculus and the mantle of the toral bulges. Signal was not detected in the intercollicular area.

Specimen 10c: embryonic day 18.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS26: inferior colliculus Strong 10c A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
TS26: superior colliculus Present Regionally restricted 10c Expression was detected in multiple layers in the superior colliculus.
TS26: midbrain Strong Regionally restricted 10c Signal was strong in the inferior colliculus. Signal was detected in the superior colliculus and the mantle of the toral bulges. Signal was not detected in the intercollicular area.

Specimen 10d: embryonic day 18.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS26: inferior colliculus Strong 10d A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
TS26: superior colliculus Present Regionally restricted 10d Expression was detected in multiple layers in the superior colliculus.
TS26: midbrain Strong Regionally restricted 10d Signal was strong in the inferior colliculus. Signal was detected in the superior colliculus and the mantle of the toral bulges. Signal was not detected in the preisthmus or the intercollicular area.

Specimen 10e: embryonic day 18.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS26: inferior colliculus Strong 10e A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
TS26: superior colliculus Present Regionally restricted 10e Expression was detected in multiple layers in the superior colliculus.
TS26: midbrain Strong Regionally restricted 10e Signal was strong in the inferior colliculus, and was detected in the superior colliculus. Signal was not detected in the preisthmus or the intercollicular area.

Specimen 10f: embryonic day 18.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS26: inferior colliculus Strong 10f A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
TS26: superior colliculus Present Regionally restricted 10f Expression was detected in multiple layers in the superior colliculus.
TS26: midbrain Strong Regionally restricted 10f Signal was strong in the inferior colliculus, and was detected in the superior colliculus. Signal was not detected in the intercollicular area. Some staining was observed in preisthmic patches caudal to the inferior colliculus and in the adjoining parabigeminal isthmic nucleus.

Specimen 10g: embryonic day 18.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS26: inferior colliculus Strong 10g A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
TS26: superior colliculus Present Regionally restricted 10g Expression was detected in multiple layers in the superior colliculus.
TS26: midbrain Strong Regionally restricted 10g Signal was strong in the inferior colliculus, and was detected in the superior colliculus. Signal was not detected in the intercollicular area. Some staining was observed in preisthmic patches caudal to the inferior colliculus and in the adjoining parabigeminal isthmic nucleus.

Specimen 10h: embryonic day 18.5 (more )
Note: Sample was postfixed in 4% paraformaldehyde.
Structure Level Pattern Image Note
TS26: inferior colliculus Strong 10h A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
TS26: superior colliculus Present Regionally restricted 10h Expression was detected in multiple layers in the superior colliculus.
TS26: midbrain Strong Regionally restricted 10h Signal was strong in the inferior colliculus and brachium of the inferior colliculus nucleus, and was detected in the superior colliculus. Signal was not detected in the intercollicular area. Some staining was observed in preisthmic patches caudal to the inferior colliculus and in the adjoining parabigeminal isthmic nucleus.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
10/09/2024
MGI 6.24
The Jackson Laboratory