Gene Expression Data
Assay Details
Assay
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Reference:
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J:336866
Puelles L, et al., The Midbrain Preisthmus: A Poorly Known Effect of the Isthmic Organizer. Int J Mol Sci. 2023 Jun 5;24(11)
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:7665224
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Gene symbol:
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Foxp2
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Gene name:
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forkhead box P2
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Probe:
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Foxp2_riboprobe
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Visualized with:
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Alkaline phosphatase
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Assay notes:
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The authors analyzed data from the Allen Developing Mouse Brain.
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Results
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Specimen
8e:
embryonic day 15.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
8e:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 15.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: inferior colliculus |
Present |
Graded |
8e
|
A deep to superficial gradiental labeling of the inferior colliculus primordium was observed.
|
TS23: superior colliculus |
Weak |
|
8e
|
|
TS23: midbrain |
Weak |
Regionally restricted |
8e
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Weak signal was detected at the intermediate stratum of the preisthmic mantle, caudal to the inferior colliculus.
|
Specimen
8f:
embryonic day 15.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
8f:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 15.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: inferior colliculus |
Present |
Graded |
8f
|
A deep to superficial gradiental labeling of the inferior colliculus primordium was observed.
|
TS23: superior colliculus |
Weak |
|
8f
|
|
TS23: midbrain |
Weak |
Regionally restricted |
8f
|
Weak signal was detected at the intermediate stratum of the preisthmic mantle, caudal to the inferior colliculus.
|
Specimen
8g:
embryonic day 15.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
8g:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 15.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: inferior colliculus |
Present |
Graded |
8g
|
A deep to superficial gradiental labeling of the inferior colliculus primordium was observed.
|
TS23: superior colliculus |
Weak |
|
8g
|
|
TS23: midbrain |
Weak |
Regionally restricted |
8g
|
Weak signal was detected at the intermediate stratum of the preisthmic mantle, caudal to the inferior colliculus.
|
Specimen
8h:
embryonic day 15.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
8h:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 15.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: inferior colliculus |
Present |
Graded |
8h
|
A deep to superficial gradiental labeling of the inferior colliculus primordium was observed.
|
TS23: superior colliculus |
Weak |
|
8h
|
|
TS23: midbrain |
Weak |
Regionally restricted |
8h
|
Weak signal was detected at the intermediate stratum of the preisthmic mantle, caudal to the inferior colliculus.
|
TS23: midbrain-hindbrain junction |
Present |
Regionally restricted |
8h
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The positive patch at the left bottom corner of the figure is an unidentified superficial isthmic mass.
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Specimen
10a:
embryonic day 18.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
10a:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 18.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: inferior colliculus |
Strong |
|
10a
|
A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
|
TS26: superior colliculus |
Present |
Regionally restricted |
10a
|
Expression was detected in multiple layers in the superior colliculus.
|
TS26: midbrain |
Strong |
Regionally restricted |
10a
|
Signal was strong in the inferior colliculus. Signal was detected in the superior colliculus and the mantle of the toral bulges. Signal was not detected in the intercollicular area.
|
Specimen
10b:
embryonic day 18.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
10b:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 18.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: inferior colliculus |
Strong |
|
10b
|
A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
|
TS26: superior colliculus |
Present |
Regionally restricted |
10b
|
Expression was detected in multiple layers in the superior colliculus.
|
TS26: midbrain |
Strong |
Regionally restricted |
10b
|
Signal was strong in the inferior colliculus. Signal was detected in the superior colliculus and the mantle of the toral bulges. Signal was not detected in the intercollicular area.
|
Specimen
10c:
embryonic day 18.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
10c:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 18.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: inferior colliculus |
Strong |
|
10c
|
A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
|
TS26: superior colliculus |
Present |
Regionally restricted |
10c
|
Expression was detected in multiple layers in the superior colliculus.
|
TS26: midbrain |
Strong |
Regionally restricted |
10c
|
Signal was strong in the inferior colliculus. Signal was detected in the superior colliculus and the mantle of the toral bulges. Signal was not detected in the intercollicular area.
|
Specimen
10d:
embryonic day 18.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
10d:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 18.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: inferior colliculus |
Strong |
|
10d
|
A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
|
TS26: superior colliculus |
Present |
Regionally restricted |
10d
|
Expression was detected in multiple layers in the superior colliculus.
|
TS26: midbrain |
Strong |
Regionally restricted |
10d
|
Signal was strong in the inferior colliculus. Signal was detected in the superior colliculus and the mantle of the toral bulges. Signal was not detected in the preisthmus or the intercollicular area.
|
Specimen
10e:
embryonic day 18.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
10e:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 18.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: inferior colliculus |
Strong |
|
10e
|
A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
|
TS26: superior colliculus |
Present |
Regionally restricted |
10e
|
Expression was detected in multiple layers in the superior colliculus.
|
TS26: midbrain |
Strong |
Regionally restricted |
10e
|
Signal was strong in the inferior colliculus, and was detected in the superior colliculus. Signal was not detected in the preisthmus or the intercollicular area.
|
Specimen
10f:
embryonic day 18.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
10f:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 18.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: inferior colliculus |
Strong |
|
10f
|
A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
|
TS26: superior colliculus |
Present |
Regionally restricted |
10f
|
Expression was detected in multiple layers in the superior colliculus.
|
TS26: midbrain |
Strong |
Regionally restricted |
10f
|
Signal was strong in the inferior colliculus, and was detected in the superior colliculus. Signal was not detected in the intercollicular area. Some staining was observed in preisthmic patches caudal to the inferior colliculus and in the adjoining parabigeminal isthmic nucleus.
|
Specimen
10g:
embryonic day 18.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
10g:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 18.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: inferior colliculus |
Strong |
|
10g
|
A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
|
TS26: superior colliculus |
Present |
Regionally restricted |
10g
|
Expression was detected in multiple layers in the superior colliculus.
|
TS26: midbrain |
Strong |
Regionally restricted |
10g
|
Signal was strong in the inferior colliculus, and was detected in the superior colliculus. Signal was not detected in the intercollicular area. Some staining was observed in preisthmic patches caudal to the inferior colliculus and in the adjoining parabigeminal isthmic nucleus.
|
Specimen
10h:
embryonic day 18.5
(more )
Note: Sample was postfixed in 4% paraformaldehyde.
Specimen
10h:
(close )
Genetic Background:
|
C57BL/6J
|
Age:
|
embryonic day 18.5
|
Sex:
|
Male
|
Type:
|
section
|
Fixation:
|
Fresh Frozen
|
Embedding:
|
Cryosection
|
Note:
|
Sample was postfixed in 4% paraformaldehyde.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: inferior colliculus |
Strong |
|
10h
|
A series of eight dorsoventral horizontal sections show that the inferior colliculus core extends in a hook pattern, passing above the preisthmus and into the dorsomedial toral area next to the roof plate.
|
TS26: superior colliculus |
Present |
Regionally restricted |
10h
|
Expression was detected in multiple layers in the superior colliculus.
|
TS26: midbrain |
Strong |
Regionally restricted |
10h
|
Signal was strong in the inferior colliculus and brachium of the inferior colliculus nucleus, and was detected in the superior colliculus. Signal was not detected in the intercollicular area. Some staining was observed in preisthmic patches caudal to the inferior colliculus and in the adjoining parabigeminal isthmic nucleus.
|
|