Compare GO annotations for TF315720 TreeFam Mouse-Dicot objects

Compare GO annotations for TF315720 Mouse-Dicot objects

Possible outliers might be spotted in a summary/comparison table of high level GO categories.
Complete table of the annotations represented in this image is provided below.

Annotations are indicated by colored nodes: human, mouse, rat, chicken, zfish, fly, worm, dicty, dicot, yeast, pombe, ecoli.
Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Red arrows indicate "regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Chicken from GOA; Zfish from Zfin; Fly from Flybase; Worm from Wormbase; Dicot from TAIR; Dicty from Dictybase; Yeast from SGD; Pombe from Sanger; Ecoli from EcoliHub.
Organisms with experimental annotations are indicated: IC, IDA, IEP, IGI, IMP, IPI. In addition, ISS annotations are so indicated.
Does not include evidence codes: IEA, IGC, NAS, ND, NR, RCA, TAS.
Graph is also available as SVG (requires viewer plug-in from Adobe)
Evidence codes are listed at the bottom of the page.
Graph generated Tue Jul 22 12:24:21 2008.

Compare annotations to GO categories for TF315720.

Entry indicates that ortholog exists for this gene.
Colored entries indicate experimental annotation.
Parentheses indicate ISS annotation only.

Category	ID	Term	Human	Mouse	Rat	Chicken	Zfish	Fly	Worm	Dicty	Dicot	Yeast	Pombe	Ecoli
Molecular Function	GO:0005488	binding	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Molecular Function	GO:0030528	transcription regulator activity	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Cellular Component	GO:0005623	cell	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Cellular Component	GO:0044464	cell part	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Cellular Component	GO:0043226	organelle	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0065007	biological regulation	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0009987	cellular process	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0032502	developmental process	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0040007	growth	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0008152	metabolic process	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0032501	multicellular organismal process	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0048519	negative regulation of biological process	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0048518	positive regulation of biological process	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0050789	regulation of biological process	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0000003	reproduction	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0022414	reproductive process	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X
Biological Process	GO:0050896	response to stimulus	X	Mouse	X	X	X	X	X	X	Dicot	X	X	X

Mouse-Dicot GO experimental annotations for TF315720

Category	ID	Term	DB Object	Evidence	With_From	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Dlx1	IDA		Mouse	MGI:MGI:3032902\|PMID:14769946
Molecular Function	GO:0003677	DNA binding	Dlx1	IDA		Mouse	MGI:MGI:3032902\|PMID:14769946
Molecular Function	GO:0003677	DNA binding	Dlx1	IDA		Mouse	MGI:MGI:1100181\|PMID:9415433
Molecular Function	GO:0003677	DNA binding	Nkx3-1	IDA		Mouse	MGI:MGI:1928182\|PMID:10993896
Molecular Function	GO:0042803	protein homodimerization activity	AT5G65310	IDA		Dicot	TAIR:Publication:501680370\|PMID:11247607
Molecular Function	GO:0042803	protein homodimerization activity	AT4G16780	IDA		Dicot	TAIR:Publication:5116\|PMID:8253077
Molecular Function	GO:0043565	sequence-specific DNA binding	AT4G40060	IDA		Dicot	TAIR:Publication:501680370\|PMID:11247607
Molecular Function	GO:0043565	sequence-specific DNA binding	AT5G15150	IDA		Dicot	TAIR:Publication:501680370\|PMID:11247607
Molecular Function	GO:0043565	sequence-specific DNA binding	AT5G65310	IDA		Dicot	TAIR:Publication:501680370\|PMID:11247607
Molecular Function	GO:0043565	sequence-specific DNA binding	AT4G16780	IDA		Dicot	TAIR:Publication:5116\|PMID:8253077
Molecular Function	GO:0016563	transcription activator activity	Nkx3-1	IDA		Mouse	MGI:MGI:1928182\|PMID:10993896
Molecular Function	GO:0016563	transcription activator activity	AT3G61890	IDA		Dicot	TAIR:Publication:501717432\|PMID:16055682
Molecular Function	GO:0016563	transcription activator activity	AT4G40060	IDA		Dicot	TAIR:Publication:501717432\|PMID:16055682
Molecular Function	GO:0016563	transcription activator activity	AT5G65310	IDA		Dicot	TAIR:Publication:501717432\|PMID:16055682
Molecular Function	GO:0003700	transcription factor activity	Nkx3-1	IDA		Mouse	MGI:MGI:1928182\|PMID:10993896
Molecular Function	GO:0008134	transcription factor binding	Nkx3-1	IDA		Mouse	MGI:MGI:1928182\|PMID:10993896
Cellular Component	GO:0005634	nucleus	Dlx1	IDA		Mouse	MGI:MGI:2389286\|PMID:12397111
Cellular Component	GO:0005634	nucleus	Dlx1	IDA		Mouse	MGI:MGI:2662644\|PMID:12724837
Cellular Component	GO:0005634	nucleus	Dlx1	IDA		Mouse	MGI:MGI:1346965\|PMID:10516593
Cellular Component	GO:0005634	nucleus	Nkx3-1	IDA		Mouse	MGI:MGI:3603077\|PMID:15987773
Cellular Component	GO:0005634	nucleus	AT3G61890	IDA		Dicot	TAIR:Publication:501713186\|PMID:15369784
Cellular Component	GO:0005634	nucleus	AT4G16780	IDA		Dicot	TAIR:Publication:501714452\|PMID:15610358
Biological Process	GO:0048646	anatomical structure formation	Dlx6	IGI	MGI:MGI:101926	Mouse	MGI:MGI:3765253\|PMID:17878916
Biological Process	GO:0048754	branching morphogenesis of a tube	Nkx3-1	IMP	MGI:MGI:1928655	Mouse	MGI:MGI:1891543\|PMID:11002344
Biological Process	GO:0030154	cell differentiation	Dlx1	IMP	MGI:MGI:1857826	Mouse	MGI:MGI:2389286\|PMID:12397111
Biological Process	GO:0008283	cell proliferation	AT4G16780	IMP		Dicot	TAIR:Publication:1211\|PMID:10477292
Biological Process	GO:0021893	cerebral cortex GABAergic interneuron fate commitment	Dlx1	IGI	MGI:MGI:94902	Mouse	MGI:MGI:3775335\|PMID:17678855
Biological Process	GO:0030326	embryonic limb morphogenesis	Dlx6	IGI	MGI:MGI:101926	Mouse	MGI:MGI:2181241\|PMID:12112878
Biological Process	GO:0048706	embryonic skeletal development	Dlx1	IGI	MGI:MGI:94902	Mouse	MGI:MGI:87771\|PMID:9187081
Biological Process	GO:0048706	embryonic skeletal development	Dlx1	IMP	MGI:MGI:1857826	Mouse	MGI:MGI:87771\|PMID:9187081
Biological Process	GO:0030855	epithelial cell differentiation	Dlx6	IGI	MGI:MGI:101926	Mouse	MGI:MGI:3765253\|PMID:17878916
Biological Process	GO:0042472	inner ear morphogenesis	Dlx6	IGI	MGI:MGI:101926	Mouse	MGI:MGI:3689133\|PMID:16900517
Biological Process	GO:0030308	negative regulation of cell growth	AT4G40060	IMP		Dicot	TAIR:Publication:501711407\|PMID:14623244
Biological Process	GO:0050680	negative regulation of epithelial cell proliferation	Nkx3-1	IMP	MGI:MGI:1928655	Mouse	MGI:MGI:1891543\|PMID:11002344
Biological Process	GO:0043524	negative regulation of neuron apoptosis	Dlx1	IMP	MGI:MGI:1857826	Mouse	MGI:MGI:3604035\|PMID:16007083
Biological Process	GO:0048715	negative regulation of oligodendrocyte differentiation	Dlx1	IGI	MGI:MGI:94902	Mouse	MGI:MGI:3775335\|PMID:17678855
Biological Process	GO:0016481	negative regulation of transcription	AT4G16780	IDA		Dicot	TAIR:Publication:1211\|PMID:10477292
Biological Process	GO:0000122	negative regulation of transcription from RNA polymerase II promoter	Dlx1	IGI	MGI:MGI:94902	Mouse	MGI:MGI:3775335\|PMID:17678855
Biological Process	GO:0042475	odontogenesis of dentine-containing tooth	Dlx1	IGI	MGI:MGI:94902	Mouse	MGI:MGI:87771\|PMID:9187081
Biological Process	GO:0048573	photoperiodism, flowering	AT4G40060	IMP		Dicot	TAIR:Publication:501711407\|PMID:14623244
Biological Process	GO:0050679	positive regulation of epithelial cell proliferation	Dlx6	IGI	MGI:MGI:101926	Mouse	MGI:MGI:3689133\|PMID:16900517
Biological Process	GO:0045941	positive regulation of transcription	AT3G61890	IDA		Dicot	TAIR:Publication:501717432\|PMID:16055682
Biological Process	GO:0045941	positive regulation of transcription	AT4G40060	IDA		Dicot	TAIR:Publication:501717432\|PMID:16055682
Biological Process	GO:0045941	positive regulation of transcription	AT5G65310	IDA		Dicot	TAIR:Publication:501717432\|PMID:16055682
Biological Process	GO:0030850	prostate gland development	Nkx3-1	IMP	MGI:MGI:1928654	Mouse	MGI:MGI:1861552\|PMID:10906459
Biological Process	GO:0030850	prostate gland development	Nkx3-1	IMP	MGI:MGI:1926960	Mouse	MGI:MGI:1335939\|PMID:10215624
Biological Process	GO:0030850	prostate gland development	Nkx3-1	IMP	MGI:MGI:1928655	Mouse	MGI:MGI:1891543\|PMID:11002344
Biological Process	GO:0009954	proximal/distal pattern formation	Dlx1	IMP	MGI:MGI:1857826	Mouse	MGI:MGI:87771\|PMID:9187081
Biological Process	GO:0009954	proximal/distal pattern formation	Dlx1	IGI	MGI:MGI:94902	Mouse	MGI:MGI:87771\|PMID:9187081
Biological Process	GO:0010017	red or far red light signaling pathway	AT4G16780	IEP		Dicot	TAIR:Publication:501723260\|PMID:17965713
Biological Process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	AT4G40060	IMP		Dicot	TAIR:Publication:501711407\|PMID:14623244
Biological Process	GO:0021882	regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment	Dlx1	IGI	MGI:MGI:94902	Mouse	MGI:MGI:3775335\|PMID:17678855
Biological Process	GO:0006355	regulation of transcription, DNA-dependent	Nkx3-1	IDA		Mouse	MGI:MGI:1928182\|PMID:10993896
Biological Process	GO:0009737	response to abscisic acid stimulus	AT5G65310	IDA		Dicot	TAIR:Publication:501705889\|PMID:12678559
Biological Process	GO:0009737	response to abscisic acid stimulus	AT5G65310	IMP		Dicot	TAIR:Publication:501705889\|PMID:12678559
Biological Process	GO:0009737	response to abscisic acid stimulus	AT3G61890	IMP		Dicot	TAIR:Publication:501725252\|PMID:15604708
Biological Process	GO:0009737	response to abscisic acid stimulus	AT3G61890	IEP		Dicot	TAIR:Publication:2556\|PMID:9617808
Biological Process	GO:0009646	response to absence of light	AT5G53980	IEP		Dicot	TAIR:Publication:501717432\|PMID:16055682
Biological Process	GO:0009733	response to auxin stimulus	AT4G16780	IMP		Dicot	TAIR:Publication:1211\|PMID:10477292
Biological Process	GO:0009733	response to auxin stimulus	AT3G01220	IEP		Dicot	TAIR:Publication:501683539\|PMID:12644682
Biological Process	GO:0009733	response to auxin stimulus	AT4G36740	IEP		Dicot	TAIR:Publication:501714446\|PMID:15567172
Biological Process	GO:0009637	response to blue light	AT4G40060	IMP		Dicot	TAIR:Publication:501711407\|PMID:14623244
Biological Process	GO:0009637	response to blue light	AT5G53980	IEP		Dicot	TAIR:Publication:501717432\|PMID:16055682
Biological Process	GO:0009735	response to cytokinin stimulus	AT4G16780	IEP		Dicot	TAIR:Publication:501717764\|PMID:16212609
Biological Process	GO:0010218	response to far red light	AT4G16780	IEP		Dicot	TAIR:Publication:5118\|PMID:8106086
Biological Process	GO:0006970	response to osmotic stress	AT3G61890	IEP		Dicot	TAIR:Publication:2556\|PMID:9617808
Biological Process	GO:0009651	response to salt stress	AT3G61890	IGI		Dicot	TAIR:Publication:501713186\|PMID:15369784
Biological Process	GO:0048364	root development	AT4G16780	IMP		Dicot	TAIR:Publication:1211\|PMID:10477292
Biological Process	GO:0007431	salivary gland development	Nkx3-1	IMP	MGI:MGI:1928654	Mouse	MGI:MGI:1861552\|PMID:10906459
Biological Process	GO:0009641	shade avoidance	AT4G16780	IEP		Dicot	TAIR:Publication:501718653\|PMID:16565297
Biological Process	GO:0010016	shoot morphogenesis	AT4G16780	IMP		Dicot	TAIR:Publication:5233\|PMID:8449400
Biological Process	GO:0009826	unidimensional cell growth	AT4G16780	IMP		Dicot	TAIR:Publication:1211\|PMID:10477292

Gene Ontology Evidence Code Abbreviations:

IC Inferred by curator

IDA Inferred from direct assay

IEA Inferred from electronic annotation

IEP Inferred from expression pattern

IGC Inferred from genomic context

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

NAS Non-traceable Author Statement

ND No biological data available

RCA Reviewed computational analysis

TAS Traceable author statement

NR Not recorded (appears in some legacy annotations)