Major Histocompatibility Complex H2 Haplotypes

Table 1 H2 Haplotypes of Inbred Strains Maintained at The Jackson Laboratory

Table 2 H2 Haplotypes of Recombinant Inbred Strains Maintained at The Jackson Laboratory

Table 3 Allelic Designations of H2 Complex for Inbred and Recombinant Strains.

Table 4 Allelic Designations for H2 Congenic Strains




Table 1 H2 Haplotypes of Inbred Strains Maintained at The Jackson Laboratory

Strain Haplotype
129P1/ReJb
129P3/Jb
129P3/JEmsb
129P4/RrRkb
129S1/SvImJb
129T2/SvEmsJb
129X1/SvJb
A/HeJa
A/Ja
A/WySnJa
AKR/Cumk
AKR/Jk
AKR/LtJgx
ALS/LtJnb1
AU/SsJq
BALB/cAnLild
BALB/cBiDsmd
BALB/cByJd
BALB/cGad
BALB/cGrRkd
BALB/cJd
BALB/cWtEid
BDP/Jp
BPH/2@J?
BPL/1@J?
BPN/3@J?
BRVR/WrDvk
BTBR T+ tf/tfb
BUB/BnJq
C3H/HeJk
C3H/HeJSxk
C3H/HeOuJk
C3H/HeSnJk
C3HeB/FeJk
C3HfB/Bik
C57BL/6BvJb
C57BL/6Jb
C57BL/6JEib
C57BL/10Jb
C57BL/10ScSnb
C57BL/10SnJb
C57BL/10Sxb
C57BL/10WtRkb
C57BLKS/Jd
C57BR/cdJk
C57L/Jb
C58/Jk
CBA/CaGnLek
CBA/CaH-T6/Jk
CBA/CaHN-Btkxid/Jk
CBA/CaJk
CBA/Jk
CE/Jk
DA/HuSnqp
DBA/1Jq
DBA/1LacJq
DBA/2Bid
DBA/2DeJd
DBA/2HaSmnd
DBA/2Jd
DDY/Jcls
DW/Jb
EL/Suzb
FL/1Rek
FL/4Rek
FVB/NJq
HRS/Jk
HTG/GoSfSng
I/LnJj
KK/HlJb
LDH2/Eib
LG/Jd
LP/Jb
MA/MyJk
MRL/MpJk
NH/KiPtk
NOD/LtJg7
NON/LtJnb1
NOR/LtJg7
NU/Jq
NZB/BlNJd
NZM2328/Jz
NZM2410/Jz
NZO/HlJz
NZW/LacJz
P/Jp
PL/Ju
PRO/Reb
RBF/DnJ?
RF/Jk
RIII/DmMobr
RIIIS/Jr
SB/Leb
SEA/GnJd
SEC/1ReJd
SENCARB/PtJq
SENCARC/PtJq
SI/Cold
SIM/Ut?
SJL/Bms
SJL/Js
SM/Jv
SOD1/Eik
ST/bJk
SWR/Bmq
SWR/Jq
YBR/Eid


? Unknown


Table 2 H2 Haplotypes of Recombinant Inbred Strains Maintained at The Jackson Laboratory

Strain Haplotype
AKXD-1/Tyk
AKXD-2/Tyd
AKXD-3/Tyk
AKXD-6/Tyk
AKXD-9/Tyd
AKXD-10/Tyk
AKXD-13/Tyd
AKXD-14/Tyd
AKXD-15/Tyk
AKXD-16/Tyd
AKXD-20/Tyd
AKXD-21/Tyk
AKXD-22/Tyd
AKXD-23/Tyd
AKXD-24/Tyd
AKXD-27/Tyk
AKXD-28/Tyk
AKXL-6/Tyk
AKXL-17A/Tyb
AKXL-29/Tyb
AKXL-38A/Ty?
AXB-1/Pgna
AXB-2/Pgna
AXB-4/Pgnb
AXB-5/Pgna
AXB-6/Pgnb
AXB-8/Pgna
AXB-10/Pgnb
AXB-12/Pgna
AXB-13/Pgnb
AXB-15/Pgna
AXB-18/Pgnb
AXB-19/Pgnb
AXB-20/Pgnb
AXB-23/Pgnb
AXB-24/Pgna
BRX58N-7/Ty?
BXA-1/Pgnb
BXA-2/Pgnb
BXA-4/Pgna
BXA-7/Pgnb
BXA-8/Pgna
BXA-11/Pgnb
BXA-12/Pgna
BXA-13/Pgnb
BXA-14/Pgnb
BXA-16/Pgnb
BXA-17/Pgna
BXA-24/Pgnb
BXA-25/Pgna
BXA-26/Pgna
BXD-1/Tyd
BXD-2/Tyb
BXD-5/Tyd
BXD-6/Tyd
BXD-8/Tyb
BXD-9/Tyd
BXD-11/Tyd
BXD-12/Tyd
BXD-13/Tyb
BXD-14/Tyb
BXD-15/Tyb
BXD-16/Tyd
BXD-18/Tyd
BXD-19/Tyb
BXD-20/Tyb
BXD-21/Tyd
BXD-22/Tyd
BXD-23/Tyb
BXD-24/Tyd
BXD-25/Tyd
BXD-27/Tyd
BXD-28/Tyd
BXD-29/Tyb
BXD-30/Tyd
BXD-31/Tyd
BXD-32/Tyd
BXD-33/Ty?
BXD-34/Ty?
BXD-35/Ty?
BXD-36/Ty?
BXD-37/Tyb
BXD-38/Ty?
BXD-39/Ty?
BXD-40/Ty?
BXD-42/Ty?
BXH-2/Tyk
BXH-3/Tyk
BXH-4/Tyb
BXH-6/Tyk
BXH-7/Tyk
BXH-8/Tyb
BXH-9/Tyb
BXH-10/Tyb
BXH-11/Tyb
BXH-12/Tyk
BXH-14/Tyk
BXH-19/Tyb
CX8-B/Ei?
CX8-C/Ei?
CX8-D/Ei?
CX8-G/Ei?
CX8-I1/Ei?
CX8-I2/Ei?
CX8-M/Ei?
CX8-N/Ei?
CXB-1/Byd
CXB-2/Byb
CXB-3/Byb
CXB-4/Byd
CXB-5/Byb
CXB-6/Byb
CXB-7/Byb
CXB-8/HiAJb
CXB-9/HiAJKb Dd
CXB-10/HiAJb
CXB-11/HiAJb
CXB-12/HiAJd
CXB-13/HiAJb
CXJ-1/SlkJd
CXJ-3/SlkJd
CXJ-4/SlkJs
CXJ-6/SlkJs
CXJ-8/SlkJd
CXJ-9/SlkJd
CXJ-15/SlkJs
LTXBJ/Na?
LTXBO/Sv?
LXB-3/Ty?
LXPL-2/Ty?
NX129-10Ty?
NX129-18Ty?
NXSM-C/Eid
NXSM-D/Eid
NXSM-E/Eid
NXSM-F/Ei?
NXSM-I/Eiv
NXSM-L/Eiv
NXSM-N/Eiv
NXSM-P/Eid
NXSM-Q/Eiv
NXSM-T1/Eiv
NXSM-T2/Eid
NXSM-U/Eiv
NXSM-W/Eid
NXSM-X/Eiv
NXSM-Z/Eiv
SWXJ-1/Bmq
SWXJ-2/Bms
SWXJ-3/Bms
SWXJ-4/Bmq
SWXJ-5/Bmq
SWXJ-6/Bms
SWXJ-7/Bmq
SWXJ-8/Bms
SWXJ-9/Bmq
SWXJ-10/Bmq
SWXJ-11/Bms
SWXJ-12/Bms
SWXJ-13/Bmq
SWXJ-14/Bms
SWXL-4/Tyb
SWXL-15/Tyq
SWXL-16/Tyb
SWXL-17/Tyq


? Unknown


Table 3 Allelic Designations of H2 Complex for Inbred and Recombinant Strains.

  Class Ia Class II Class III Class Ia Class Ib
H2 haplotype K Ab Aa Eb Ea* S D L Qa-2 T18 Q1
a k k k k k d d d a a a
b b b b b ^ b b b** a b b
d d d d d d d d d a c b
f f f f f f f f f b d b
j j j j j j j b b a b b
k k k k k k k k k b b b
g7 d g7 d d d d b ^ a b b
gx d g7 g7 ^ ^ ? dx ? ? ? ?
m k k k k k k q q a a a
nb1 b nb1 nb1 k k ? b ? ? ? ?
p p p p p p p p p b e a
q q q q q q q q q a b b
r r r r r r r r r b b b
s s s s s s s s s a b b
u u u u u u u d d a a a
v v v v v v v v v a b b
z u u u u u z z z b b b


? unknown

^ null

* Additional strains that are Ea null: DBA/1J, DBA/1LacJ, SJL/J

** C57BL/6, C57BL/10 and substrains are null at L


Table 4 Allelic Designations for H2 Congenic Strains

    Class Ia Class II Class III Class Ia Class Ib
Haplotype Strain K Ab Aa Eb Ea S D L Qa-2 T18 Q1
aB10.A-H2a H2-T18a/SgSnJ kkkkkd ddaaa
ar1B10.LG-H2ar1 d????? ?????
ar1C3.LG-H2ar1/CkcCy d????? ?????
as1B10.S-H2(8R) kkkk/sss ssabb
bA.BY-H2b H2-T18b/SnJ bbbb^b b^abb
bAKR.B6-H2b bbbb^b b^abb
bC3.SW-H2b/SnJ bbbb^b b^abb
bBKS.B6-H2b bbbb^b b^abb
bBRVR.B10-H2b bbbb^b b^abb
bC.B10-H2b/LilMcdJ bbbb^b b^abb
bD1.LP-H2b H2-T18b?/Sn bbbb^b b^abb
bNOD.B10Sn-H2b bbbb^b b^abb
bm1B6.C-H2bm1/By bm1bbbbb b^abb
bm1B6.C-H2bm1/ByJ bm1bbbbb b^abb
bm2B6.C-H2bm2/By bm2bbbbb b^abb
bm3C57BL/6J-H2bm3/Eg bm3bbbbb b^abb
bm4B6.C-H2bm4/By bm4bbbbb b^abb
bm5C57BL/6Kh-H2bm5/KhEg bm5bbbbb b^abb
bm7B6.C-H2bm7/KhEg bm7bbbbb b^abb
bm10B6.C-H2bm10/KhEg bm10bbbbb b^abb
bm11B6.C-H2bm11/KhEg bm11bbbbb b^abb
bm12B6.C-H2bm12/KhEg bbm12bbbb b^abb
bm14B6.C-H2bm14/By bbbbbb bm14^abb
bp5B10.F-H2bp5(14R) bbbbbp ppb??
bq1B10.MBR-H2bq1/SxEg bkkkkk qqaaa
dB10.D2-H2d H2-T18c Hc0/o2Sn dddddd ddacb
dB10.D2-H2d/n2Sn dddddd ddadb
dB10.D2-H2d H2-T18c Hc0/oSnJ dddddd ddacb
dB10.D2-H2d H2-T18c Hc1/nSnJ dddddd ddacb
dBRVR.D2-H2d dddddd ddadb
dB6.C-H2d Mdmg1c/aBy dddddd ddadb
dD1.C-H2d H2-T18c/Sn dddddd ddadb
dm1B10.D2-H2dm1/Eg dddddd dm1dm1???
dm2BALB/c-H2dm2/KhEg dddddd ddbcb
fB10.M-H2f/nMob ffffff ffbdb
fB10.M-H2f H2-T18a?/Sn ffffff ffbdb
fA.CA-H2f H2-T18a/Sn ffffff ffbdb
fNON.NOD-H2g7 dg7ddfd bbabb
fm2B10.M-H2fm2/Mob ffffff fm2f???
gB10.HTG-H2g/2Cy dddddd b^abb
gC3.HTG-H2g H2-T18b?/Sn dddddd b^abb
gC.HTG-H2g/3Cy dddddd b^abb
g3B10.D2-H2g3(R103)/Eg dddddd b^abb
g6B6.C-H2g6 dddddd b????
g7B6.NOD - (D17Mit21-D17Mit10) dg7dddd b^abb
g7NON.NOD-H2g7 dg7dddd b^abb
h2B10.A-H2h2(2R)/SgSnJ kkkkkd b^abb
h4B10.A-H2h4(4R)/SgDvEg kkkk/bbb b^abb
i3B10.A-H2i3(3R)/SgDvEg bbbb/kkd ddaaa
i5B10.A-H2i5 H2-T18a(5R)/SgSnJ bbbb/kkd ddaaa
i7B10.D2-H2i7(R107)/Eg bbbbbb ddacb
iaB10.D2-H2ia(R106)/Eg bbbbbb dm1dm1acb
jB10.WB-H2jH2-T18b/Sn jjjjjj bbabb
jC3.JK-H2j H2-T18b/Sn jjjjjj bbabb
kB6.AKR-H2k/FlaEg kkkkkk kkbbb
kB6.AKR-H2k kkkkkk kkbbb
kC.C3-H2k/LilMcdJ kkkkkk kkbbb
k2B10.BR-H2k2 H2-T18a/SgSnJ kkkkkk kkbaa
kp1B10.P-H2kp1(10R)/Sg kppppp ppb??
mB10.AKM-H2m H2-T18a/SnJ kkkkkk qqaaa
nb1NOD.NON-H2nb1 bnb1nb1kk? b????
o2C3H-H2o2 C4b/SfSn dddddd kkbbb
oz2AKR.L-H2oz2/Cy b????? k????
pC3.NB-H2p H2-T18c?/Sn pppppp ppbea
paB10.Y-H2pa H2-T18c/Sn ?????? ?????
pb1B10.F-H2pb1(13R) pppppb b^abb
qB10.D1-H2q/SgJ qqqq^q qqabb
qNOD.SWR-H2q qqqq^q qqabb
qp1B10.DA-H2qp1 H2-T18b (80NS)/Sn qqqqqq ssabb
qp1D1.DA-H2qp1/Sn qqqqqq ssabb
rB10.RIII-H2r(71NS)/nMob rrrrrr rrbbb
rB10.RIII-H2r H2-T18b (71NS)/Sn rrrrrr rrbbb
rLP.RIII-H2r H2-T18b/Sn rrrrrr rrbbb
sA.SW-H2s H2-T18b/SnJ ssss^s ssabb
sB10.S-H2s/SgMcdJ ssss^s ssabb
sm1B10.S-H2sm1 (12R)/Sg ssssss s????
t1A.TL-H2t1/SfDvEgMob skkkkk ddacb
t2A.TH-H2t2/SfDvEgMob ssssss ddaaa
t4B10.S-H2t4 (9R) ssss/kkd ddaaa
uB20.PL-H2u H2-T18a (73NS)/Sn uuuuuu ddaaa
vB10.SM-H2v H2-T18b (70NS)/Sn cw vvvvvv vvabb
y1B10.AQR-H2y1/KljMcdJ qkkkks ssaaa
y2B10.T-H2y2 (6R)/SgDvEg qqqq^q ddaaa


? unknown

^ null