format-version: 1.0 date: 06:11:2010 17:40 saved-by: mdolan auto-generated-by: OBO-Edit 1.101 default-namespace: mousecyc [Term] id: Pathways name: Pathways [Term] id: 1CMET2-PWY name: formylTHF biosynthesis I is_a: Folate-Biosynthesis ! Folate Biosynthesis [Term] id: 2-3-Butanediol-Degradation name: 2,3-Butanediol Degradation is_a: Alcohol-Degradation ! Alcohols Degradation [Term] id: 2-Aminobenzoate-Degradation name: 2-Aminobenzoate Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: 2-Nirobenzoate-Degradation name: 2-Nitrobenzoate Degradation is_a: Nitrobenzoate-Degradation ! Nitrobenzoate Degradation [Term] id: 2-Oxobutanoate-Degradation name: 2-Oxobutanoate Degradation is_a: CARBOXYLATES-DEG ! Carboxylates Degradation [Term] id: 3-Chlorobenzoate-Degradation name: 3-Chlorobenzoate Degradation is_a: Chlorobenzoate-Degradation ! Chlorobenzoate Degradation [Term] id: 3-Chlorocatechol-Degradation name: 3-Chlorocatechol Degradation is_a: Chlorocatechol-Degradation ! Chlorocatechol Degradation [Term] id: 3-Chlorotoluene-Degradation name: 3 Chlorotoluene Degradation is_a: Chlorotoluene-Degradation ! Chlorotoluene Degradation [Term] id: 3-Dehydroquinate-Biosynthesis name: 3-Dehydroquinate Biosynthesis is_a: AROMATIC-COMPOUNDS-BIOSYN ! Aromatic Compounds Biosynthesis [Term] id: 4-Aminobutyraye-Degradation name: 4-Aminobutyrate Degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation [Term] id: 4-Hydroxybenzoate-Biosynthesis name: 4-Hydroxybenzoate Biosynthesis is_a: AROMATIC-COMPOUNDS-BIOSYN ! Aromatic Compounds Biosynthesis [Term] id: 4-Hydroxyproline-Degradation name: 4-Hydroxyproline Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: 4-Nitrotoluene-Degradation name: 4-Nitrotoluene Degradation is_a: Nitro-Toluene-Degradation ! Nitrotoluene Degradation [Term] id: 4-Toluenesulfonate-Degradation name: 4-Toluenesulfonate Degradation is_a: Sulfoaromatics-Degradation ! Sulfoaromatic Compounds Degradation [Term] id: 4AMINOBUTMETAB-PWY name: 4-aminobutyrate degradation I is_a: 4-Aminobutyraye-Degradation ! 4-Aminobutyrate Degradation [Term] id: Abscisic-Acid-Biosynthesis name: Abscisic Acid Biosynthesis is_a: Plant-Hormone-Biosynthesis ! Plant Hormones Biosynthesis is_a: SESQUITERPENOID-SYN ! Sesquiterpenoids Biosynthesis [Term] id: Abscisic-Acid-Degradation name: Abscisic Acid Degradation is_a: PLANT-HORMONE-DEG ! Plant Hormones Degradation is_a: Sesquiterpenoid-Degradation ! Sesquiterpenoids Degradation [Term] id: Abscisic-Acid-Derivative-Biosynthesis name: Abscisic acid derivative Biosynthesis is_a: Abscisic-Acid-Biosynthesis ! Abscisic Acid Biosynthesis [Term] id: Acetate-Formation name: Acetate Formation is_a: CARBOXYLATES-DEG ! Carboxylates Degradation [Term] id: ACETOACETATE-DEG-PWY name: acetoacetate degradation (to acetyl CoA) is_a: Fatty-Acid-and-Lipid-Degradation ! Fatty Acid and Lipids Degradation [Term] id: Acetoin-Biosynthesis name: Acetoin Biosynthesis is_a: Fermentation ! Fermentation [Term] id: Acetone-Degradation name: Acetone Degradation is_a: Fatty-Acid-and-Lipid-Degradation ! Fatty Acid and Lipids Degradation [Term] id: Acetyl-CoA-Butyrate name: Acetyl-CoA Fermentation to Butyrate is_a: Fermentation ! Fermentation [Term] id: Acetylmuramoyl-Pentapeptide-Biosynthesis name: UDP-N-acetylmuramoyl-pentapeptide biosynthesis is_a: Cell-Structure-Biosynthesis ! Cell structures Biosynthesis [Term] id: Acid-Resistance name: Acid Resistance is_a: Detoxification ! Detoxification [Term] id: Adenosylcobalamin-Biosynthesis name: Adenosylcobalamin Biosynthesis is_a: Cobalamin-Biosynthesis ! Cobalamin Biosynthesis [Term] id: ADENOSYLHOMOCYSCAT-PWY name: methionine salvage II (mammalia) is_a: METHIONINE-SYN ! Methionine Biosynthesis [Term] id: AERESPDON-PWY name: aerobic respiration -- electron donors reaction list is_a: AEROBIC-RESPIRATION ! Aerobic Respiration [Term] id: AEROBIC-RESPIRATION name: Aerobic Respiration is_a: Respiration ! Respiration [Term] id: AIR-Biosynthesis name: 5-Aminoimidazole Ribonucleotide Biosynthesis is_a: Nucleotide-Biosynthesis ! Nucleosides and Nucleotides Biosynthesis [Term] id: ALANINE-DEG name: Alanine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: ALANINE-DEG3-PWY name: alanine degradation III is_a: ALANINE-DEG ! Alanine Degradation [Term] id: ALANINE-SYN name: Alanine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: ALANINE-SYN2-PWY name: alanine biosynthesis II is_a: ALANINE-SYN ! Alanine Biosynthesis [Term] id: Alcohol-Degradation name: Alcohols Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Aldehyde-Degradation name: Aldehyde Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: ALKALOIDS name: Alkaloids Degradation is_a: N-CONTAINING-SECONDARY-CMPD-DEG ! Nitrogen Containing Secondary Compounds Degradation [Term] id: ALKALOIDS-SYN name: Alkaloids Biosynthesis is_a: N-CONTAINING-SECONDARY-CMPD-SYN ! Nitrogen-Containing Secondary Compounds Biosynthesis [Term] id: Allantoin-degradation name: Allantoin Degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation [Term] id: AMINE-DEG name: Amines and Polyamines Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: AMINE-SYN name: Amines Biosynthesis is_a: N-CONTAINING-SECONDARY-CMPD-SYN ! Nitrogen-Containing Secondary Compounds Biosynthesis [Term] id: Amino-Acid-Biosynthesis name: Amino acids Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: Amino-Acid-Degradation name: Amino Acids Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Aminoacyl-tRNAs-Charging name: Aminoacyl-tRNA Charging is_a: Biosynthesis ! Biosynthesis [Term] id: Ammonia-oxidation name: Ammonia oxidation is_a: NITROGEN-DEG ! Nitrogen Compounds Metabolism [Term] id: ANAEROBIC-RESPIRATION name: Anaerobic Respiration is_a: Respiration ! Respiration [Term] id: ANAGLYCOLYSIS-PWY name: anaerobic glycolysis is_a: GLYCOLYSIS-VARIANTS ! Glycolysis is_a: Super-Pathways ! Superpathways [Term] id: ANTHOCYANIN-SYN name: Anthocyanins Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: Antibiotic-Biosynthesis name: Antibiotic Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: APOCAROTENOID-SYN name: Apocarotenoids Biosynthesis is_a: TETRATERPENOID-SYN ! Tetraterpenoids Biosynthesis [Term] id: ARG-PRO-PWY name: arginine degradation VI (arginase 2 pathway) is_a: ARGININE-DEG ! Arginine Degradation is_a: PROLINE-SYN ! Proline Biosynthesis [Term] id: ARGASEDEG-PWY name: arginine degradation I (arginase pathway) is_a: ARGININE-DEG ! Arginine Degradation is_a: GLUTAMATE-SYN ! Glutamate Biosynthesis [Term] id: ARGININE-DEG name: Arginine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: ARGININE-SYN name: Arginine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: ARGININE-SYN4-PWY name: arginine biosynthesis IV is_a: ARGININE-SYN ! Arginine Biosynthesis [Term] id: ARGSPECAT-PWY name: spermine biosynthesis is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: AROMATIC-COMPOUNDS-BIOSYN name: Aromatic Compounds Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: AROMATIC-COMPOUNDS-DEGRADATION name: Aromatic Compounds Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Arsenate-Detoxification name: Arsenate Detoxification is_a: Detoxification ! Detoxification [Term] id: Ascorbate-Biosynthesis name: Ascorbate Biosynthesis is_a: Vitamin-Biosynthesis ! Vitamins [Term] id: ASPARAGINE-BIOSYNTHESIS name: asparagine biosynthesis I is_a: ASPARAGINE-SYN ! Asparagine Biosynthesis [Term] id: ASPARAGINE-DEG name: Asparagine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: ASPARAGINE-DEG1-PWY name: asparagine degradation I is_a: ASPARAGINE-DEG ! Asparagine Degradation [Term] id: ASPARAGINE-SYN name: Asparagine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: ASPARTATE-DEG name: Aspartate Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: ASPARTATE-DEG1-PWY name: aspartate degradation I is_a: ASPARTATE-DEG ! Aspartate Degradation [Term] id: ASPARTATE-SYN name: Aspartate Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: ASPBIO-PWY name: aspartate biosynthesis is_a: ASPARTATE-SYN ! Aspartate Biosynthesis [Term] id: Atrazine-Degradation name: Atrazine Degradation is_a: s-Triazine-Degradation ! s-Triazine Degredation [Term] id: AURONE-SYN name: Aurones Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: Autoinducer-Biosynthesis name: Autoinducer Biosynthesis is_a: Other-biosynthesis ! Other Biosynthesis [Term] id: Autotrophic-CO2-Fixation name: Autotrophic CO2 Fixation is_a: CO2-Fixation ! CO2 Fixation [Term] id: Auxin-Biosynthesis name: Auxins Biosynthesis is_a: Plant-Hormone-Biosynthesis ! Plant Hormones Biosynthesis [Term] id: AUXINS-DEGRADATION name: Auxins Degradation is_a: PLANT-HORMONE-DEG ! Plant Hormones Degradation [Term] id: BENZENOID-SYN name: Benzenoids Biosynthesis is_a: PHENYLPROPANOID-SYN ! Phenylpropanoid Derivatives Biosynthesis [Term] id: Benzoate-Degradation name: Benzoate Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Benzoyl-CoA-Degradation name: Benzoyl-CoA Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: BETA-ALA-DEGRADATION-I-PWY name: β-alanine degradation I is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: Beta-Alanine-Biosynthesis name: β Alanine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: Betaine-Biosynthesis name: Betaine Biosynthesis is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: BETALAIN-ALKALOIDS name: Betalaine alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: BGALACT-PWY name: lactose degradation III is_a: LACTOSE-DEG ! Lactose Degradation [Term] id: Biosynthesis name: Biosynthesis is_a: Pathways ! Pathways [Term] id: BIOTIN-SYN name: Biotin is_a: Vitamin-Biosynthesis ! Vitamins [Term] id: Brassinosteroid-Biosynthesis name: Brassinosteroids Biosynthesis is_a: Plant-Hormone-Biosynthesis ! Plant Hormones Biosynthesis [Term] id: BSUBPOLYAMSYN-PWY name: spermidine biosynthesis is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: Butanediol-Biosynthesis name: Butanediol Biosynthesis is_a: Fermentation ! Fermentation [Term] id: C1-COMPOUNDS name: C1 Compounds Utilization and Assimilation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Caffeine-Biosynthesis name: Caffeine Biosynthesis is_a: PURINE-ALKALOIDS ! Purine alkaloids [Term] id: CARBO-BIOSYNTHESIS name: Sugars Biosynthesis is_a: Carbohydrates-Biosynthesis ! Carbohydrates Biosynthesis [Term] id: Carbohydrates-Biosynthesis name: Carbohydrates Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: Carbohydrates-Degradation name: Carbohydrates Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Carbon-disulfide-degradation name: Carbon-Disulfide Degradation is_a: Other-Degradation ! Degradation/Utilization/Assimilation - Other [Term] id: Carbon-tetrachloride-degradation name: Carbon Tetrachloride Degradation is_a: CHLORINATED-COMPOUNDS-DEG ! Chlorinated Compounds Degradation [Term] id: CARBOXYLATES-DEG name: Carboxylates Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Cardiolipin-Biosynthesis name: Cardiolipin Biosynthesis is_a: Phospholipid-Biosynthesis ! Phospholipid Biosynthesis [Term] id: CARN-DEG name: Carnitine Degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation [Term] id: Carotenoid-Degradation name: Carotenoids Degradation is_a: Tetraterpenoid-Degradation ! Tetraterpenoids Degradation [Term] id: CAROTENOID-SYN name: Carotenoids Biosynthesis is_a: TETRATERPENOID-SYN ! Tetraterpenoids Biosynthesis [Term] id: Carveol-Degradation name: Carveol Degradation is_a: TERPENOID-DEG ! Terpenoids Degradation [Term] id: Catechol-Degradation name: Catechol Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: CDP-diacylglycerol-Biosynthesis name: CDP-diacylglycerol Biosynthesis is_a: Phospholipid-Biosynthesis ! Phospholipid Biosynthesis [Term] id: Cell-Structure-Biosynthesis name: Cell structures Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: Cell-Wall-Biosynthesis name: Cell Wall Biosynthesis is_a: Cell-Structure-Biosynthesis ! Cell structures Biosynthesis [Term] id: CHALCONE-SYN name: Chalcones Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: CHEMOAUTOTROPHIC-ENERGY-METABOLISM name: Chemoautotrophic Energy Metabolism is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: CHLORINATED-COMPOUNDS-DEG name: Chlorinated Compounds Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Chloroaromatic-Compounds-Degradation name: Chloroaromatic Compounds Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation is_a: CHLORINATED-COMPOUNDS-DEG ! Chlorinated Compounds Degradation [Term] id: Chlorobenzene-Degradation name: Chlorobenzene Degradation is_a: Chloroaromatic-Compounds-Degradation ! Chloroaromatic Compounds Degradation [Term] id: Chlorobenzoate-Degradation name: Chlorobenzoate Degradation is_a: Chloroaromatic-Compounds-Degradation ! Chloroaromatic Compounds Degradation [Term] id: Chlorocatechol-Degradation name: Chlorocatechol Degradation is_a: Chloroaromatic-Compounds-Degradation ! Chloroaromatic Compounds Degradation [Term] id: Chlorophyll-a-Biosynthesis name: Chlorophyll a-Biosynthesis is_a: Chlorophyll-Biosynthesis ! Chlorophyll Biosynthesis [Term] id: Chlorophyll-Biosynthesis name: Chlorophyll Biosynthesis is_a: Porphyrin-Compounds-Biosynthesis ! Porphyrin Compounds Biosynthesis [Term] id: Chlorophyllide-a-Biosynthesis name: Chlorophyllide a Biosynthesis is_a: Chlorophyll-Biosynthesis ! Chlorophyll Biosynthesis [Term] id: Chlorotoluene-Degradation name: Chlorotoluene Degradation is_a: Chloroaromatic-Compounds-Degradation ! Chloroaromatic Compounds Degradation [Term] id: Choline-Biosynthesis name: Choline Biosynthesis is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: Choline-Degradation name: Choline Degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation [Term] id: Chorismate-Biosynthesis name: Chorismate Biosynthesis is_a: AROMATIC-COMPOUNDS-BIOSYN ! Aromatic Compounds Biosynthesis [Term] id: CINNAMATE-SYN name: Cinnamates Biosynthesis is_a: PHENYLPROPANOID-SYN ! Phenylpropanoid Derivatives Biosynthesis [Term] id: CITRULBIO-PWY name: citrulline biosynthesis is_a: Citrulline-Biosynthesis ! Citrulline-Biosynthesis [Term] id: Citrulline-Biosynthesis name: Citrulline-Biosynthesis is_a: Other-Amino-Acid-Biosynthesis ! Other Amino Acid Biosynthesis [Term] id: CITRULLINE-DEG-PWY name: citrulline degradation is_a: MISCELLANEOUS-DEG ! Miscellaneous Amino Acids Degradation [Term] id: CMP-KDO-Biosynthesis name: CMP-KDO biosynthesis is_a: Polysaccharides-Biosynthesis ! Polysaccharides Biosynthesis [Term] id: CMP-N-Acetylneuraminate-Biosynthesis name: CMP-N-acetylneuraminate biosynthesis is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis [Term] id: CO2-Fixation name: CO2 Fixation is_a: C1-COMPOUNDS ! C1 Compounds Utilization and Assimilation [Term] id: CoA-Biosynthesis name: Coenzyme A Biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: COA-PWY name: coenzyme A biosynthesis is_a: CoA-Biosynthesis ! Coenzyme A Biosynthesis [Term] id: Cobalamin-Biosynthesis name: Cobalamin Biosynthesis is_a: Vitamin-Biosynthesis ! Vitamins [Term] id: CODH-PWY name: reductive acetyl coenzyme A pathway is_a: Autotrophic-CO2-Fixation ! Autotrophic CO2 Fixation [Term] id: Cofactor-Biosynthesis name: Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: COFACTOR-DEGRADATION name: Cofactors, Prosthetic Groups, Electron Carriers Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: COLANSYN-PWY name: colanic acid building blocks biosynthesis is_a: Cell-Structure-Biosynthesis ! Cell structures Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: Conjugated-Fatty-Acid-Biosynthesis name: Conjugated Fatty Acid Biosynthesis is_a: Unusual-fatty-acid-biosynthesis ! Unusual Fatty Acid Biosynthesis [Term] id: COUMARIN-PHYTOALEXINS name: Coumarin Phytoalexins Biosynthesis is_a: PHYTOALEXIN-SYN ! Phytoalexins Biosynthesis [Term] id: COUMARIN-SYN name: Coumarins Biosynthesis is_a: PHENYLPROPANOID-SYN ! Phenylpropanoid Derivatives Biosynthesis [Term] id: Creatinine-Degradation name: Creatinine Degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation [Term] id: CRNFORCAT-PWY name: creatinine degradation I is_a: Creatinine-Degradation ! Creatinine Degradation [Term] id: CYANOGENIC-GLUCOSIDE-DEG name: Cyanogenic Glucosides Degradation is_a: N-CONTAINING-GLUCOSIDE-DEG ! Nitrogen Containing Glucosides Degradation [Term] id: CYANOGENIC-GLUCOSIDE-SYN name: Cyanogenic glucosides is_a: N-CONTAINING-GLUCOSIDE-SYN ! Nitrogen-Containing Glucosides Biosynthesis [Term] id: Cyclitols-Biosynthesis name: Cyclitols Biosynthesis is_a: SUGAR-DERIVS ! Sugar Derivatives Biosynthesis [Term] id: CYCLITOLS-DEG name: Cyclitols Degradation is_a: Sugar-Derivatives ! Sugar Derivatives Degradation [Term] id: Cyclopropane-fatty-acid-biosyn name: Cyclopropane Fatty Acids Biosynthesis is_a: Unusual-fatty-acid-biosynthesis ! Unusual Fatty Acid Biosynthesis [Term] id: CYSDEGRV-PWY name: L-cysteine degradation VI is_a: CYSTEINE-DEG ! Cysteine Degradation [Term] id: CYSTEINE-DEG name: Cysteine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: CYSTEINE-DEG-PWY name: L-cysteine degradation I is_a: CYSTEINE-DEG ! Cysteine Degradation [Term] id: CYSTEINE-SYN name: Cysteine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: CYSTEINE-SYN2-PWY name: cysteine biosynthesis II is_a: CYSTEINE-SYN ! Cysteine Biosynthesis [Term] id: CYTOKININ-BIOSYNTHESIS name: Cytokinins Biosynthesis is_a: Plant-Hormone-Biosynthesis ! Plant Hormones Biosynthesis [Term] id: CYTOKININS-DEGRADATION name: Cytokinins Degradation is_a: PLANT-HORMONE-DEG ! Plant Hormones Degradation [Term] id: D-Arabinose-Degradation name: D-arabinose Degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: Degradation name: Degradation/Utilization/Assimilation is_a: Pathways ! Pathways [Term] id: Demethylmenaquinone-Biosynthesis name: Demethylmenaquinone Biosynthesis is_a: Quinone-Biosynthesis ! Quinone Biosynthesis [Term] id: Deoxyribonucleotide-Biosynthesis name: 2'-deoxyribonucleotides is_a: Nucleotide-Biosynthesis ! Nucleosides and Nucleotides Biosynthesis [Term] id: Dephospho-CoA-Biosynthesis name: 2'-(5''-phosphoribosyl)-3'-dephospho-CoA Biosynthesis is_a: CoA-Biosynthesis ! Coenzyme A Biosynthesis [Term] id: DETOX1-PWY name: superoxide radicals degradation is_a: Detoxification ! Detoxification [Term] id: Detoxification name: Detoxification is_a: Pathways ! Pathways [Term] id: DHNA-Biosynthesis name: 1,4-dihydroxy-2-naphthoate biosynthesis is_a: Quinone-Biosynthesis ! Quinone Biosynthesis [Term] id: Dichlorotoluene-Degradation name: Dichlorotoluene Degradation is_a: Chlorotoluene-Degradation ! Chlorotoluene Degradation [Term] id: Dimethylsulfide-Degradation name: Dimethylsulfide Degradation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Dimethylsulfoniopropionate-Biosynthesis name: Dimethylsulfoniopropionate Biosynthesis is_a: Other-biosynthesis ! Other Biosynthesis [Term] id: Dimethylsulfoniopropionate-Degradation name: Dimethylsulfoniopropionate Degradation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Dinitrotoluene-Degradation name: Dinitrotoluene Degradation is_a: Nitroaromatic-Degradation ! Nitroaromatic Compounds Degradation [Term] id: DITERPENOID-SYN name: Diterpenoids Biosynthesis is_a: Terpenoid-Biosynthesis ! Terpenoids Biosynthesis [Term] id: DRIBOPMET-PWY name: (deoxy)ribose phosphate degradation is_a: NUCLEO-DEG ! Nucleosides and Nucleotides Degradation and Recycling [Term] id: Electron-Transfer name: Electron Transfer is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: ELLAGITANNINS name: Ellagitannins Biosynthesis is_a: TANNIN-SYN ! Hydrolyzable Tannins Biosynthesis [Term] id: Energy-Metabolism name: Generation of precursor metabolites and energy is_a: Pathways ! Pathways [Term] id: EPIDERMAL-STRUCTURE name: Epidermal structures is_a: PLANT-CELL-STRUCTURE ! Plant cell structures [Term] id: Ethanol-Degradation name: Ethanol Degradation is_a: Alcohol-Degradation ! Alcohols Degradation [Term] id: FAO-PWY name: fatty acid β-oxidation I is_a: Fatty-Acid-Degradation ! Fatty Acids Degradation [Term] id: Fatty-Acid-and-Lipid-Degradation name: Fatty Acid and Lipids Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Fatty-acid-biosynthesis name: Fatty Acid Biosynthesis is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: Fatty-Acid-Degradation name: Fatty Acids Degradation is_a: Fatty-Acid-and-Lipid-Degradation ! Fatty Acid and Lipids Degradation [Term] id: FATTY-ACID-DERIVATIVE-DEG name: Fatty Acid Derivatives Degradation is_a: SECONDARY-METABOLITE-DEGRADATION ! Secondary Metabolites Degradation [Term] id: FATTY-ACID-DERIVATIVE-SYN name: Fatty Acid Derivatives Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: Fermentation name: Fermentation is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: FLAVANONES-SYN name: Flavanones Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: Flavin-Biosynthesis name: Flavin Biosynthesis is_a: Vitamin-Biosynthesis ! Vitamins [Term] id: FLAVONE-SYN name: Flavones Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: FLAVONOID-DEG name: Flavonoids Degradation is_a: SECONDARY-METABOLITE-DEGRADATION ! Secondary Metabolites Degradation [Term] id: FLAVONOID-PHYTOALEXINS name: Flavonoid Phytoalexins Biosynthesis is_a: PHYTOALEXIN-SYN ! Phytoalexins Biosynthesis [Term] id: FLAVONOID-SYN name: Flavonoids Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: FLAVONOL-SYN name: Flavonols Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: Fluorene-Degradation name: Fluorene Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Folate-Biosynthesis name: Folate Biosynthesis is_a: Vitamin-Biosynthesis ! Vitamins [Term] id: Formaldehyde-Assimilation name: Formaldehyde Assimilation is_a: C1-COMPOUNDS ! C1 Compounds Utilization and Assimilation [Term] id: Formaldehyde-Oxidation name: Formaldehyde Oxidation is_a: C1-COMPOUNDS ! C1 Compounds Utilization and Assimilation [Term] id: GALACTMETAB-PWY name: UDP-galactose biosynthesis (salvage pathway from galactose using UDP-glucose) is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: GALACTOSE-DEGRADATION name: Galactose Degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: GALLATE-DEG name: Gallate Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: GALLOTANNINS name: Gallotannins Biosynthesis is_a: TANNIN-SYN ! Hydrolyzable Tannins Biosynthesis [Term] id: Gamma-linolenate-Biosynthesis name: γ-linolenate Biosynthesis is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: GDP-Mannose-Biosynthesis name: GDP Mannose Biosynthesis is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis [Term] id: GGPP-Biosynthesis name: Geranylgeranyldiphosphate Biosynthesis is_a: Polyprenyl-Biosynthesis ! Polyprenyl Biosynthesis [Term] id: GIBBERELLIN-SYN name: Gibberellins Biosynthesis is_a: DITERPENOID-SYN ! Diterpenoids Biosynthesis is_a: Plant-Hormone-Biosynthesis ! Plant Hormones Biosynthesis [Term] id: GIBBERELLINS-DEGRADATION name: Gibberellins Degradation is_a: PLANT-HORMONE-DEG ! Plant Hormones Degradation [Term] id: GLCMANNANAUT-PWY name: superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation is_a: Super-Pathways ! Superpathways [Term] id: GLNSYN-PWY name: glutamine biosynthesis I is_a: GLUTAMINE-SYN ! Glutamine Biosynthesis [Term] id: GLUAMCAT-PWY name: N-acetylglucosamine degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation is_a: Sugar-Derivatives ! Sugar Derivatives Degradation [Term] id: GLUCONEO-PWY name: gluconeogenesis I is_a: Gluconeogenesis ! Gluconeogenesis [Term] id: Gluconeogenesis name: Gluconeogenesis is_a: CARBO-BIOSYNTHESIS ! Sugars Biosynthesis [Term] id: GLUCOSE1PMETAB-PWY name: glucose and glucose-1-phosphate degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: GLUCOSINOLATE-DEG name: Glucosinolates Degradation is_a: N-CONTAINING-GLUCOSIDE-DEG ! Nitrogen Containing Glucosides Degradation [Term] id: GLUCOSINOLATE-SYN name: Glucosinolates is_a: N-CONTAINING-GLUCOSIDE-SYN ! Nitrogen-Containing Glucosides Biosynthesis [Term] id: GLUDEG-I-PWY name: glutamate degradation III (via 4-aminobutyrate) is_a: GLUTAMATE-DEG ! Glutamate Degradation [Term] id: GLUT-REDOX-PWY name: glutathione redox reactions II is_a: Reductants ! Reductants Biosynthesis [Term] id: GLUTAMATE-DEG name: Glutamate Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: GLUTAMATE-SYN name: Glutamate Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: GLUTAMATE-SYN2-PWY name: glutamate biosynthesis II is_a: GLUTAMATE-SYN ! Glutamate Biosynthesis [Term] id: GLUTAMINE-DEG name: Glutamine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: GLUTAMINE-DEG1-PWY name: glutamine degradation I is_a: GLUTAMINE-DEG ! Glutamine Degradation [Term] id: GLUTAMINE-SYN name: Glutamine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: GLUTAMINE-SYN2-PWY name: glutamine biosynthesis II is_a: GLUTAMINE-SYN ! Glutamine Biosynthesis [Term] id: GLUTATHIONESYN-PWY name: glutathione biosynthesis is_a: Reductants ! Reductants Biosynthesis [Term] id: GLUTFUMARATE-PWY name: glutamine degradation II is_a: GLUTAMINE-DEG ! Glutamine Degradation [Term] id: GLUTOXA-PWY name: glutamate degradation VII is_a: GLUTAMATE-DEG ! Glutamate Degradation [Term] id: GLYCEROL-DEG name: Glycerol Degradation is_a: Alcohol-Degradation ! Alcohols Degradation [Term] id: GLYCGREAT-PWY name: glycine degradation (creatine biosynthesis) is_a: GLYCINE-DEG ! Glycine Degradation is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: GLYCINE-DEG name: Glycine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: GLYCINE-SYN name: Glycine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: GLYCLEAV-PWY name: glycine cleavage complex is_a: GLYCINE-DEG ! Glycine Degradation [Term] id: GLYCOCAT-PWY name: glycogen degradation I is_a: CARBO-BIOSYNTHESIS ! Sugars Biosynthesis is_a: Glycogen-Degradation ! Glycogen Degradation [Term] id: GLYCOGEN-BIOSYN name: Glucogen and starch biosynthesis is_a: Polysaccharides-Biosynthesis ! Polysaccharides Biosynthesis [Term] id: Glycogen-Degradation name: Glycogen Degradation is_a: POLYSACCHARIDES-DEG ! Polysaccharides Degradation [Term] id: GLYCOGENSYNTH-PWY name: glycogen biosynthesis I (from ADP-D-Glucose) is_a: GLYCOGEN-BIOSYN ! Glucogen and starch biosynthesis [Term] id: GLYCOLYSIS name: glycolysis I is_a: GLYCOLYSIS-VARIANTS ! Glycolysis is_a: Super-Pathways ! Superpathways [Term] id: GLYCOLYSIS-VARIANTS name: Glycolysis is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: GLYSYN-ALA-PWY name: glycine biosynthesis III is_a: GLYCINE-SYN ! Glycine Biosynthesis [Term] id: GLYSYN-PWY name: glycine biosynthesis I is_a: GLYCINE-SYN ! Glycine Biosynthesis [Term] id: GLYSYN-THR-PWY name: glycine biosynthesis IV is_a: GLYCINE-SYN ! Glycine Biosynthesis [Term] id: HEME name: Heme Compounds Degradation is_a: COFACTOR-DEGRADATION ! Cofactors, Prosthetic Groups, Electron Carriers Degradation [Term] id: HEME-BIOSYNTHESIS-II name: heme biosynthesis from uroporphyrinogen-III I is_a: HEME-SYN ! Heme Biosynthesis [Term] id: HEME-SYN name: Heme Biosynthesis is_a: Porphyrin-Compounds-Biosynthesis ! Porphyrin Compounds Biosynthesis [Term] id: HISTIDINE-DEG name: Histidine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: HISTIDINE-SYN name: Histidine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: HOMOCYSDEGR-PWY name: cysteine biosynthesis/homocysteine degradation is_a: CYSTEINE-SYN ! Cysteine Biosynthesis is_a: HOMOCYSTEINE-DEG ! Homocysteine Degradation [Term] id: HOMOCYSTEINE-DEG name: Homocysteine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: HOMOSER-THRESYN-PWY name: threonine biosynthesis from homoserine is_a: THREONINE-BIOSYNTHESIS ! Threonine Biosynthesis [Term] id: HOMOSERINE-DEG name: Homoserine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: HORMONE-DEG name: Hormones Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: HORMONE-SYN name: Hormones Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: Hydrogen-Oxidation name: Hydrogen Oxidation is_a: CHEMOAUTOTROPHIC-ENERGY-METABOLISM ! Chemoautotrophic Energy Metabolism [Term] id: HYDROXYPRODEG-PWY name: 4-hydroxyproline degradation I is_a: 4-Hydroxyproline-Degradation ! 4-Hydroxyproline Degradation [Term] id: IMP-Biosynthesis name: Inosine-5'-phosphate Biosynthesis is_a: PUR-NUC-SYN ! Purine Nucleotide Biosynthesis [Term] id: IND-AMINO-ACID-SYN name: Individual Amino Acids Biosynthesis is_a: Amino-Acid-Biosynthesis ! Amino acids Biosynthesis [Term] id: INDOLE-ALKALOIDS name: Indole alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: INDOLE-PHYTOALEXIN-SYN name: Indole Phytoalexins Biosynthesis is_a: PHYTOALEXIN-SYN ! Phytoalexins Biosynthesis [Term] id: ISOFLAVONOID-PHYTOALEXINS name: Isoflavonoid Phytoalexins Biosynthesis is_a: PHYTOALEXIN-SYN ! Phytoalexins Biosynthesis [Term] id: ISOFLAVONOID-SYN name: Isoflavonoids Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: ISOLEUCINE-DEG name: Isoleucine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: ISOLEUCINE-SYN name: Isoleucine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: ISOPRENOIDS name: Hemiterpenes Biosynthesis is_a: Terpenoid-Biosynthesis ! Terpenoids Biosynthesis [Term] id: ISOPRENOIDS-DEG name: Hemiterpenes Degradation is_a: TERPENOID-DEG ! Terpenoids Degradation [Term] id: ISOQUINOLINE-ALKALOIDS name: Isoquinoline and Benzylisoquinoline alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: Jasmonates-Biosynthesis name: Jasmonates Biosynthesis is_a: Plant-Hormone-Biosynthesis ! Plant Hormones Biosynthesis [Term] id: L-Arabinose-Degradation name: L-arabinose Degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: Lactaldehyde-Degradation name: Lactaldehyde Degradation is_a: Aldehyde-Degradation ! Aldehyde Degradation [Term] id: LACTOSE-DEG name: Lactose Degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: LARABITOLUTIL-PWY name: xylitol degradation is_a: SUGAR-ALCOHOLS-DEG ! Sugar Alcohols Degradation [Term] id: LEUCINE-DEG name: Leucine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: LEUCINE-SYN name: Leucine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: LEUCOANTHOCYANIDIN-SYN name: Leucoanthocyanidins (flavan-3,4-diols) Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: LIGNAN-SYN name: Lignans Biosynthesis is_a: PHENYLPROPANOID-SYN ! Phenylpropanoid Derivatives Biosynthesis [Term] id: LIGNIN-SYN name: Lignins Biosynthesis is_a: PHENYLPROPANOID-SYN ! Phenylpropanoid Derivatives Biosynthesis [Term] id: Limonene-Degradation name: Limonene Degradation is_a: TERPENOID-DEG ! Terpenoids Degradation [Term] id: Linoleate-Biosynthesis name: Linoleate Biosynthesis is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: LIPAS-PWY name: triacylglycerol degradation is_a: Fatty-Acid-and-Lipid-Degradation ! Fatty Acid and Lipids Degradation [Term] id: LIPASYN-PWY name: phospholipases is_a: Fatty-Acid-and-Lipid-Degradation ! Fatty Acid and Lipids Degradation [Term] id: Lipid-Biosynthesis name: Fatty Acids and Lipids Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: Lipoate-Biosynthesis name: Lipoate Biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: LYSINE-DEG name: Lysine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: LYSINE-DEG1-PWY name: lysine degradation II is_a: LYSINE-DEG ! Lysine Degradation [Term] id: LYSINE-SYN name: Lysine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: MALATE-ASPARTATE-SHUTTLE-PWY name: malate/aspartate shuttle pathway is_a: ASPARTATE-DEG ! Aspartate Degradation [Term] id: Malonate-Degradation name: Malonate Degradation is_a: CARBOXYLATES-DEG ! Carboxylates Degradation [Term] id: MANDELATE-DEG name: Mandelates Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: MANGDPMET-PWY name: GDP-mannose metabolism is_a: Cell-Structure-Biosynthesis ! Cell structures Biosynthesis [Term] id: MANNCAT-PWY name: D-mannose degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS name: dolichyl-diphosphooligosaccharide biosynthesis is_a: Oligosaccharides-Biosynthesis ! Oligosaccharides Biosynthesis [Term] id: Mannosylglycerate-Biosynthesis name: Mannosylglycerate Biosynthesis is_a: Other-biosynthesis ! Other Biosynthesis [Term] id: Melatonin-Degradation name: melatonin degradation is_a: HORMONE-DEG ! Hormones Degradation [Term] id: Menaquinone-Biosynthesis name: Menaquinone Biosynthesis is_a: Quinone-Biosynthesis ! Quinone Biosynthesis [Term] id: Mercury-Detoxification name: Mercury Detoxification is_a: Detoxification ! Detoxification [Term] id: Metabolic-Regulators name: Metabolic Regulators Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: METHANOGENESIS name: Methanogenesis is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: METHIONINE-DEG name: Methionine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: METHIONINE-DEG1-PWY name: methionine degradation I (to homocysteine) is_a: METHIONINE-DEG ! Methionine Degradation [Term] id: METHIONINE-SYN name: Methionine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: Methyl-Citrate-Cycle name: 2-Methylcitrate Cycle is_a: Propionate-Degradation ! Propionate Degradation [Term] id: Methylglyoxal-Detoxification name: Methylglyoxal Detoxification is_a: Detoxification ! Detoxification [Term] id: Methylthiopropionate-Degradation name: Methylthiopropionate Degradation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: MISCELLANEOUS-DEG name: Miscellaneous Amino Acids Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: MONOTERPENOID-SYN name: Monoterpenoids Biosynthesis is_a: Terpenoid-Biosynthesis ! Terpenoids Biosynthesis [Term] id: N-CONTAINING-GLUCOSIDE-DEG name: Nitrogen Containing Glucosides Degradation is_a: N-CONTAINING-SECONDARY-CMPD-DEG ! Nitrogen Containing Secondary Compounds Degradation [Term] id: N-CONTAINING-GLUCOSIDE-SYN name: Nitrogen-Containing Glucosides Biosynthesis is_a: N-CONTAINING-SECONDARY-CMPD-SYN ! Nitrogen-Containing Secondary Compounds Biosynthesis [Term] id: N-CONTAINING-SECONDARY-CMPD-DEG name: Nitrogen Containing Secondary Compounds Degradation is_a: SECONDARY-METABOLITE-DEGRADATION ! Secondary Metabolites Degradation [Term] id: N-CONTAINING-SECONDARY-CMPD-SYN name: Nitrogen-Containing Secondary Compounds Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: NAD-BIOSYNTHESIS-II name: NAD salvage pathway II is_a: NAD-SYN ! NAD Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: NAD-BIOSYNTHESIS-III name: NAD biosynthesis III is_a: NAD-SYN ! NAD Biosynthesis [Term] id: NAD-Metabolism name: NAD Metabolism is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: NAD-SYN name: NAD Biosynthesis is_a: NAD-Metabolism ! NAD Metabolism [Term] id: NADPHOS-DEPHOS-PWY name: NAD phosphorylation and dephosphorylation is_a: NAD-Metabolism ! NAD Metabolism [Term] id: NADSYN-PWY name: NAD biosynthesis II (from tryptophan) is_a: NAD-SYN ! NAD Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: Nicotinate-Degradation name: Nicotinate Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Nicotine-Degradation name: Nicotine Degradation is_a: Other-Degradation ! Degradation/Utilization/Assimilation - Other [Term] id: Nitrate-Reduction name: Nitrate Reduction is_a: NITROGEN-DEG ! Nitrogen Compounds Metabolism [Term] id: Nitro-Toluene-Degradation name: Nitrotoluene Degradation is_a: Nitroaromatic-Degradation ! Nitroaromatic Compounds Degradation [Term] id: Nitroaromatic-Degradation name: Nitroaromatic Compounds Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Nitrobenzene-Degradation name: Nitrobenzene Degradation is_a: Nitroaromatic-Degradation ! Nitroaromatic Compounds Degradation [Term] id: Nitrobenzoate-Degradation name: Nitrobenzoate Degradation is_a: Nitroaromatic-Degradation ! Nitroaromatic Compounds Degradation [Term] id: NITROGEN-DEG name: Nitrogen Compounds Metabolism is_a: Noncarbon-Nutrients ! Inorganic Nutrients Metabolism [Term] id: Nitrophenol-Degradation name: Nitophenol Degradation is_a: Nitroaromatic-Degradation ! Nitroaromatic Compounds Degradation is_a: Phenolic-Compounds-Degradation ! Phenolic Compounds Degradation [Term] id: NON-PROTEIN-AMINO-ACID-SYN name: Non protein Amino Acids Biosynthesis is_a: N-CONTAINING-SECONDARY-CMPD-SYN ! Nitrogen-Containing Secondary Compounds Biosynthesis [Term] id: Noncarbon-Nutrients name: Inorganic Nutrients Metabolism is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: NONOXIPENT-PWY name: pentose phosphate pathway (non-oxidative branch) is_a: Pentose-Phosphate-Cycle ! Pentose Phosphate Pathways [Term] id: NUCLEO-DEG name: Nucleosides and Nucleotides Degradation and Recycling is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Nucleotide-Biosynthesis name: Nucleosides and Nucleotides Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: O-Antigen-Biosynthesis name: O-antigen Biosynthesis is_a: Cell-Structure-Biosynthesis ! Cell structures Biosynthesis [Term] id: o-Nitrophenol-Degradation name: 2-Nitrophenol Degradation is_a: Nitrophenol-Degradation ! Nitophenol Degradation [Term] id: Oleate-Biosynthesis name: Oleate Biosynthesis is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: Oligosaccharides-Biosynthesis name: Oligosaccharides Biosynthesis is_a: Carbohydrates-Biosynthesis ! Carbohydrates Biosynthesis [Term] id: ORNSPNANA-PWY name: spermine biosynthesis II is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: Other-Amino-Acid-Biosynthesis name: Other Amino Acid Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: Other-biosynthesis name: Other Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: Other-Degradation name: Degradation/Utilization/Assimilation - Other is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: OTHER-ENERGY name: Other is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: OXIDATIVEPENT-PWY name: pentose phosphate pathway (oxidative branch) is_a: Pentose-Phosphate-Cycle ! Pentose Phosphate Pathways [Term] id: p-Nitrophenol-Degradation name: 4-Nitrophenol Degradation is_a: Nitrophenol-Degradation ! Nitophenol Degradation [Term] id: P1-PWY name: salvage pathways of purine and pyrimidine nucleotides is_a: Purine-Nucleotides-Salvage ! Purine Nucleotide Salvage is_a: PYR-NUC-SYN ! Pyrimidine Nucleotide Biosynthesis [Term] id: P121-PWY name: salvage pathways of purine nucleosides I is_a: Purine-Nucleotides-Salvage ! Purine Nucleotide Salvage [Term] id: P341-PWY name: glycolysis V is_a: GLYCOLYSIS-VARIANTS ! Glycolysis [Term] id: P42-PWY name: incomplete reductive TCA cycle is_a: Reductive-TCA-Cycles ! Reductive TCA Cycles [Term] id: P61-PWY name: UDP-glucose conversion is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: Palmitate-Biosynthesis name: Palmitate Biosynthesis is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: Palmitoleate-Biosynthesis name: Palmitoleate Biosynthesis is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: Pantothenate-Biosynthesis name: Pantothenate Biosynthesis is_a: Vitamin-Biosynthesis ! Vitamins [Term] id: PARATHION-DEGRADATION-PWY name: parathion degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: PENTOSE-P-PWY name: pentose phosphate pathway is_a: Pentose-Phosphate-Cycle ! Pentose Phosphate Pathways is_a: Super-Pathways ! Superpathways [Term] id: Pentose-Phosphate-Cycle name: Pentose Phosphate Pathways is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: PEPTIDE-ALKALOIDS name: Peptide alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: Peptidoglycan-Biosynthesis name: Peptidoglycan Biosynthesis is_a: Cell-Wall-Biosynthesis ! Cell Wall Biosynthesis [Term] id: Phenol-Degradation name: Phenol Degradation is_a: Phenolic-Compounds-Degradation ! Phenolic Compounds Degradation [Term] id: Phenolic-Compounds-Degradation name: Phenolic Compounds Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Phenylacetate-Degradation name: Phenylacetate Degradation is_a: Phenolic-Compounds-Degradation ! Phenolic Compounds Degradation [Term] id: PHENYLALANINE-DEG name: Phenylalanine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: PHENYLALANINE-DEG1-PWY name: phenylalanine degradation I (aerobic) is_a: PHENYLALANINE-DEG ! Phenylalanine Degradation [Term] id: PHENYLALANINE-SYN name: Phenylalanine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: PHENYLPROPANOID-DERIVATIVE-DEG name: Phenylpropanoid Derivatives Degradation is_a: SECONDARY-METABOLITE-DEGRADATION ! Secondary Metabolites Degradation [Term] id: PHENYLPROPANOID-SYN name: Phenylpropanoid Derivatives Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: PHLOBAPHENE-SYN name: Phlobaphenes Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: PHOSLIPSYN-PWY name: phospholipid biosynthesis I is_a: Phospholipid-Biosynthesis ! Phospholipid Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PhosphatidylcholineBiosynthesis name: PhosphatidylcholineBiosynthesis is_a: Phospholipid-Biosynthesis ! Phospholipid Biosynthesis [Term] id: PhosphatidylethanolamineBiosynthesis name: PhosphatidylethanolamineBiosynthesis is_a: Phospholipid-Biosynthesis ! Phospholipid Biosynthesis [Term] id: PhosphatidylglycerolBiosynthesis name: PhosphatidylglycerolBiosynthesis is_a: Phospholipid-Biosynthesis ! Phospholipid Biosynthesis [Term] id: Phospholipid-Biosynthesis name: Phospholipid Biosynthesis is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: Phosphorus-Compounds name: Phosphorus Compounds Metabolism is_a: Noncarbon-Nutrients ! Inorganic Nutrients Metabolism [Term] id: Photosynthesis name: Photosynthesis is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: Phylloquinone-Biosynthesis name: Phylloquinone Biosynthesis is_a: Quinone-Biosynthesis ! Quinone Biosynthesis [Term] id: Phytate-Biosynthesis name: Phytate Biosynthesis is_a: Cyclitols-Biosynthesis ! Cyclitols Biosynthesis [Term] id: Phytate-Degradation name: Phytate Degradation is_a: CYCLITOLS-DEG ! Cyclitols Degradation [Term] id: PHYTOALEXIN-DEG name: Phytoalexins Degradation is_a: SECONDARY-METABOLITE-DEGRADATION ! Secondary Metabolites Degradation [Term] id: PHYTOALEXIN-SYN name: Phytoalexins Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: Phytyl-Diphosphate-Biosynthesis name: Phytyl Diphosphate Biosynthesis is_a: DITERPENOID-SYN ! Diterpenoids Biosynthesis [Term] id: PLANT-CELL-STRUCTURE name: Plant cell structures is_a: Cell-Structure-Biosynthesis ! Cell structures Biosynthesis [Term] id: Plant-Hormone-Biosynthesis name: Plant Hormones Biosynthesis is_a: HORMONE-SYN ! Hormones Biosynthesis [Term] id: PLANT-HORMONE-DEG name: Plant Hormones Degradation is_a: HORMONE-DEG ! Hormones Degradation [Term] id: Plastoquinone-Biosynthesis name: Plastoquinone Biosynthesis is_a: Quinone-Biosynthesis ! Quinone Biosynthesis [Term] id: PLPSAL-PWY name: pyridoxal 5'-phosphate salvage pathway is_a: Vitamin-B6-Biosynthesis ! Vitamin B6 Biosynthesis [Term] id: Polyamine-Biosynthesis name: Amines and Polyamines Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: POLYKETIDE-ALKALOIDS name: Polyketide alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: POLYKETIDE-DEG name: Polyketides Degradation is_a: SECONDARY-METABOLITE-DEGRADATION ! Secondary Metabolites Degradation [Term] id: POLYKETIDE-SYN name: Polyketides Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: Polymer-Degadation name: Polymeric Compounds Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Polyprenyl-Biosynthesis name: Polyprenyl Biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: Polysaccharides-Biosynthesis name: Polysaccharides Biosynthesis is_a: Carbohydrates-Biosynthesis ! Carbohydrates Biosynthesis [Term] id: POLYSACCHARIDES-DEG name: Polysaccharides Degradation is_a: Carbohydrates-Degradation ! Carbohydrates Degradation is_a: Polymer-Degadation ! Polymeric Compounds Degradation [Term] id: POLYTERPENOID-SYN name: Polyterpenoids Biosynthesis is_a: Terpenoid-Biosynthesis ! Terpenoids Biosynthesis [Term] id: Porphyrin-Compounds-Biosynthesis name: Porphyrin Compounds Biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: PRENYLFLAVONOID-SYN name: Prenylflavonoids Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: PRIMARY-CELL-WALL name: Primary cell wall is_a: PLANT-CELL-STRUCTURE ! Plant cell structures [Term] id: PROANTHOCYANIDIN-SYN name: Proanthocyanidins Biosynthesis is_a: FLAVONOID-SYN ! Flavonoids Biosynthesis [Term] id: PROLINE-DEG name: Proline Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: PROLINE-DEG2-PWY name: proline degradation III is_a: PROLINE-DEG ! Proline Degradation [Term] id: PROLINE-SYN name: Proline Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: PROLINE-SYN2-PWY name: proline biosynthesis II is_a: PROLINE-SYN ! Proline Biosynthesis [Term] id: Propionate-Degradation name: Propionate Degradation is_a: CARBOXYLATES-DEG ! Carboxylates Degradation [Term] id: PROPIONMET-PWY name: methylmalonyl pathway is_a: Propionate-Degradation ! Propionate Degradation [Term] id: Protocatechuate-Degradation name: Protocatechuate Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: PRPP-Biosynthesis name: PRPP Biosynthesis is_a: Other-biosynthesis ! Other Biosynthesis [Term] id: PUR-NUC-SYN name: Purine Nucleotide Biosynthesis is_a: Nucleotide-Biosynthesis ! Nucleosides and Nucleotides Biosynthesis [Term] id: PURINE-ALKALOIDS name: Purine alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: Purine-Degradation name: Purine Degradation is_a: NUCLEO-DEG ! Nucleosides and Nucleotides Degradation and Recycling [Term] id: Purine-Nucleotide-De-Novo-Biosynthesis name: Purine Nucleotide de novo Biosynthesis is_a: PUR-NUC-SYN ! Purine Nucleotide Biosynthesis [Term] id: Purine-Nucleotides-Salvage name: Purine Nucleotide Salvage is_a: PUR-NUC-SYN ! Purine Nucleotide Biosynthesis [Term] id: Putrescine-Biosynthesis name: Putrescine Biosynthesis is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: Putrescine-Degradation name: Putrescine Degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation [Term] id: PWY-0 name: putrescine degradation III is_a: Putrescine-Degradation ! Putrescine Degradation [Term] id: PWY-1801 name: formaldehyde oxidation II (glutathione-dependent) is_a: Formaldehyde-Oxidation ! Formaldehyde Oxidation [Term] id: PWY-2161 name: folate polyglutamylation I is_a: Folate-Biosynthesis ! Folate Biosynthesis [Term] id: PWY-2161B name: folate polyglutamylation II is_a: Folate-Biosynthesis ! Folate Biosynthesis [Term] id: PWY-2201 name: folate transformations is_a: Folate-Biosynthesis ! Folate Biosynthesis [Term] id: PWY-2301 name: myo-inositol biosynthesis is_a: Cyclitols-Biosynthesis ! Cyclitols Biosynthesis [Term] id: PWY-2361 name: 3-oxoadipate degradation is_a: CARBOXYLATES-DEG ! Carboxylates Degradation [Term] id: PWY-2501 name: fatty acid α-oxidation is_a: Fatty-Acid-Degradation ! Fatty Acids Degradation [Term] id: PWY-3561 name: choline biosynthesis III is_a: Choline-Biosynthesis ! Choline Biosynthesis [Term] id: PWY-3661 name: glycine betaine degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation [Term] id: PWY-3781 name: aerobic respiration -- electron donor II is_a: AEROBIC-RESPIRATION ! Aerobic Respiration [Term] id: PWY-3821 name: galactose degradation III is_a: GALACTOSE-DEGRADATION ! Galactose Degradation is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis [Term] id: PWY-3841 name: formylTHF biosynthesis II is_a: Folate-Biosynthesis ! Folate Biosynthesis [Term] id: PWY-3861 name: mannitol degradation II is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: PWY-3981 name: β-alanine biosynthesis I is_a: Beta-Alanine-Biosynthesis ! β Alanine Biosynthesis [Term] id: PWY-3982 name: β-alanine biosynthesis III is_a: Beta-Alanine-Biosynthesis ! β Alanine Biosynthesis [Term] id: PWY-40 name: putrescine biosynthesis I is_a: Putrescine-Biosynthesis ! Putrescine Biosynthesis [Term] id: PWY-4041 name: γ-glutamyl cycle is_a: Reductants ! Reductants Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY-4061 name: glutathione-mediated detoxification is_a: Other-Degradation ! Degradation/Utilization/Assimilation - Other [Term] id: PWY-4081 name: glutathione redox reactions I is_a: Reductants ! Reductants Biosynthesis [Term] id: PWY-4202 name: arsenate detoxification I (glutaredoxin) is_a: Arsenate-Detoxification ! Arsenate Detoxification [Term] id: PWY-4261 name: glycerol degradation IV is_a: Fatty-Acid-and-Lipid-Degradation ! Fatty Acid and Lipids Degradation is_a: GLYCEROL-DEG ! Glycerol Degradation [Term] id: PWY-4302 name: aerobic respiration -- electron donor III is_a: Respiration ! Respiration [Term] id: PWY-4321 name: glutamate degradation IV is_a: GLUTAMATE-DEG ! Glutamate Degradation [Term] id: PWY-4361 name: methionine salvage I is_a: METHIONINE-SYN ! Methionine Biosynthesis [Term] id: PWY-4561 name: proline degradation II is_a: PROLINE-DEG ! Proline Degradation [Term] id: PWY-46 name: putrescine biosynthesis III is_a: Putrescine-Biosynthesis ! Putrescine Biosynthesis [Term] id: PWY-4681 name: kievitone biosynthesis is_a: ISOFLAVONOID-PHYTOALEXINS ! Isoflavonoid Phytoalexins Biosynthesis is_a: ISOFLAVONOID-SYN ! Isoflavonoids Biosynthesis [Term] id: PWY-4821 name: UDP-D-xylose biosynthesis is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis [Term] id: PWY-4921 name: protein citrullination is_a: Citrulline-Biosynthesis ! Citrulline-Biosynthesis [Term] id: PWY-4981 name: proline biosynthesis II (from arginine) is_a: PROLINE-SYN ! Proline Biosynthesis [Term] id: PWY-4983 name: citrulline-nitric oxide cycle is_a: ARGININE-DEG ! Arginine Degradation is_a: ARGININE-SYN ! Arginine Biosynthesis is_a: Metabolic-Regulators ! Metabolic Regulators Biosynthesis [Term] id: PWY-4984 name: urea cycle is_a: NITROGEN-DEG ! Nitrogen Compounds Metabolism [Term] id: PWY-5004 name: superpathway of citrulline metabolism is_a: Citrulline-Biosynthesis ! Citrulline-Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY-5030 name: histidine degradation III is_a: HISTIDINE-DEG ! Histidine Degradation [Term] id: PWY-5041 name: S-adenosyl-L-methionine cycle II is_a: S-adenosyl-L-methionine-cycle ! S-adenosyl-L-methionine cycle [Term] id: PWY-5044 name: purine degradation I (aerobic) is_a: Purine-Degradation ! Purine Degradation [Term] id: PWY-5046 name: branched-chain α-keto acid dehydrogenase complex is_a: Amino-Acid-Degradation ! Amino Acids Degradation is_a: Respiration ! Respiration [Term] id: PWY-5067 name: glycogen biosynthesis II (from UDP-D-Glucose) is_a: GLYCOGEN-BIOSYN ! Glucogen and starch biosynthesis [Term] id: PWY-5079 name: phenylalanine degradation III is_a: PHENYLALANINE-DEG ! Phenylalanine Degradation [Term] id: PWY-5080 name: very long chain fatty acid biosynthesis is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: PWY-5084 name: 2-ketoglutarate dehydrogenase complex is_a: Amino-Acid-Degradation ! Amino Acids Degradation is_a: Respiration ! Respiration [Term] id: PWY-5109 name: 2-methylbutyrate biosynthesis is_a: Other-biosynthesis ! Other Biosynthesis [Term] id: PWY-5123 name: trans,trans-farnesyl diphosphate biosynthesis is_a: Polyprenyl-Biosynthesis ! Polyprenyl Biosynthesis [Term] id: PWY-5136 name: fatty acid β-oxidation II (core pathway) is_a: Fatty-Acid-Degradation ! Fatty Acids Degradation [Term] id: PWY-5137 name: fatty acid β-oxidation III (unsaturated, odd number) is_a: Fatty-Acid-Degradation ! Fatty Acids Degradation [Term] id: PWY-5138 name: fatty acid β-oxidation IV (unsaturated, even number) is_a: Fatty-Acid-Degradation ! Fatty Acids Degradation [Term] id: PWY-5142 name: acyl-ACP thioesterase pathway is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY-5143 name: fatty acid activation is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY-5148 name: acyl-CoA hydrolysis is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY-5172 name: acetyl-CoA biosynthesis (from citrate) is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: PWY-5177 name: glutaryl-CoA degradation is_a: CARBOXYLATES-DEG ! Carboxylates Degradation [Term] id: PWY-5189 name: tetrapyrrole biosynthesis II is_a: Tetrapyrrole-Biosynthesis ! Tetrapyrrole Biosynthesis [Term] id: PWY-5269 name: cardiolipin biosynthesis II is_a: Cardiolipin-Biosynthesis ! Cardiolipin Biosynthesis [Term] id: PWY-5326 name: sulfite oxidation IV is_a: Sulfite-Oxidation ! Sulfite Oxidation [Term] id: PWY-5328 name: superpathway of methionine degradation is_a: METHIONINE-DEG ! Methionine Degradation is_a: Super-Pathways ! Superpathways [Term] id: PWY-5329 name: L-cysteine degradation III is_a: CYSTEINE-DEG ! Cysteine Degradation [Term] id: PWY-5340 name: sulfate activation for sulfonation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: PWY-5350 name: thiosulfate disproportionation III (rhodanese) is_a: Thiosulfate-Disproportionation ! Thiosulfate Disproportionation [Term] id: PWY-5386 name: methylglyoxal degradation I is_a: Aldehyde-Degradation ! Aldehyde Degradation is_a: Methylglyoxal-Detoxification ! Methylglyoxal Detoxification [Term] id: PWY-5389 name: methylthiopropionate biosynthesis is_a: Other-biosynthesis ! Other Biosynthesis [Term] id: PWY-5409 name: divinyl ether biosynthesis II (13-LOX) is_a: FATTY-ACID-DERIVATIVE-SYN ! Fatty Acid Derivatives Biosynthesis [Term] id: PWY-5410 name: 13-LOX and 13-HPL pathway is_a: FATTY-ACID-DERIVATIVE-SYN ! Fatty Acid Derivatives Biosynthesis [Term] id: PWY-5481 name: pyruvate fermentation to lactate is_a: Pyruvate-Degradation ! Pyruvate Fermentation [Term] id: PWY-5483 name: pyruvate fermentation to acetate III is_a: Pyruvate-Degradation ! Pyruvate Fermentation is_a: Super-Pathways ! Superpathways [Term] id: PWY-5489 name: methyl parathion degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: PWY-5490 name: paraoxon degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: PWY-5514 name: UDP-N-acetyl-D-galactosamine biosynthesis II is_a: Cell-Structure-Biosynthesis ! Cell structures Biosynthesis is_a: UDP-Nac-Galactosamine-Biosynthesis ! UDP-N-acetyl-D-galactosamine Biosynthesis [Term] id: PWY-5515 name: L-arabinose degradation II is_a: L-Arabinose-Degradation ! L-arabinose Degradation [Term] id: PWY-5525 name: glucuronate degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: PWY-5535 name: acetate formation from acetyl-CoA II is_a: Acetate-Formation ! Acetate Formation [Term] id: PWY-5651 name: tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde is_a: TRYPTOPHAN-DEG ! Tryptophan Degradation [Term] id: PWY-5652 name: 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA is_a: CARBOXYLATES-DEG ! Carboxylates Degradation [Term] id: PWY-5653 name: NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde is_a: NAD-SYN ! NAD Biosynthesis [Term] id: PWY-5657 name: GDP-mannose biosynthesis I is_a: GDP-Mannose-Biosynthesis ! GDP Mannose Biosynthesis [Term] id: PWY-5659 name: GDP-mannose biosynthesis is_a: GDP-Mannose-Biosynthesis ! GDP Mannose Biosynthesis [Term] id: PWY-5661 name: GDP-glucose biosynthesis is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis [Term] id: PWY-5663 name: tetrahydrobiopterin biosynthesis I is_a: Tetrahydrobiopterin-Biosynthesis ! Tetrahydrobiopterin Biosynthesis [Term] id: PWY-5664 name: tetrahydrobiopterin biosynthesis II is_a: Tetrahydrobiopterin-Biosynthesis ! Tetrahydrobiopterin Biosynthesis [Term] id: PWY-5667 name: CDP-diacylglycerol biosynthesis I is_a: CDP-diacylglycerol-Biosynthesis ! CDP-diacylglycerol Biosynthesis [Term] id: PWY-5668 name: cardiolipin biosynthesis I is_a: Cardiolipin-Biosynthesis ! Cardiolipin Biosynthesis [Term] id: PWY-5669 name: phosphatidylethanolamine biosynthesis I is_a: PhosphatidylethanolamineBiosynthesis ! PhosphatidylethanolamineBiosynthesis [Term] id: PWY-5670 name: epoxysqualene biosynthesis is_a: Other-biosynthesis ! Other Biosynthesis is_a: TRITERPENOID-SYN ! Triterpenoids Biosynthesis [Term] id: PWY-5686 name: uridine-5'-phosphate biosynthesis is_a: PYR-NUC-SYN ! Pyrimidine Nucleotide Biosynthesis [Term] id: PWY-5687 name: pyrimidine ribonucleotides interconversion is_a: PYR-NUC-SYN ! Pyrimidine Nucleotide Biosynthesis [Term] id: PWY-5690-1 name: TCA cycle variation III (eukaryotic) is_a: TCA-VARIANTS ! TCA cycle [Term] id: PWY-5691 name: urate degradation to allantoin is_a: Urate-Degradation ! Urate Degradation [Term] id: PWY-5695 name: urate biosynthesis is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: PWY-5697 name: allantoin degradation to ureidoglycolate I (urea producing) is_a: Allantoin-degradation ! Allantoin Degradation [Term] id: PWY-5743 name: 3-hydroxypropionate cycle is_a: Autotrophic-CO2-Fixation ! Autotrophic CO2 Fixation [Term] id: PWY-5750 name: itaconate biosynthesis is_a: Carbohydrates-Biosynthesis ! Carbohydrates Biosynthesis [Term] id: PWY-5766 name: glutamate degradation X is_a: GLUTAMATE-DEG ! Glutamate Degradation [Term] id: PWY-5767 name: glycogen degradation III is_a: Glycogen-Degradation ! Glycogen Degradation is_a: Super-Pathways ! Superpathways [Term] id: PWY-5789 name: 3-hydroxypropionate/4-hydroxybutyrate cycle is_a: Autotrophic-CO2-Fixation ! Autotrophic CO2 Fixation [Term] id: PWY-5805 name: nonaprenyl diphosphate biosynthesis is_a: Polyprenyl-Biosynthesis ! Polyprenyl Biosynthesis [Term] id: PWY-5870 name: ubiquinone-8 biosynthesis (eukaryotic) is_a: Ubiquinone-Biosynthesis ! Ubiquinone Biosynthesis [Term] id: PWY-5874 name: heme degradation is_a: HEME ! Heme Compounds Degradation [Term] id: PWY-5884 name: wax esters biosynthesis I is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY-5885 name: wax esters biosynthesis II is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY-5920 name: heme biosynthesis II is_a: HEME-SYN ! Heme Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY-5921 name: L-glutamine biosynthesis II (tRNA-dependent) is_a: Aminoacyl-tRNAs-Charging ! Aminoacyl-tRNA Charging is_a: GLUTAMINE-SYN ! Glutamine Biosynthesis [Term] id: PWY-5934 name: Fe(III)-reduction and Fe(II) transport is_a: Transport-Pathways ! Transport Pathways [Term] id: PWY-5941 name: glycogen degradation II is_a: Glycogen-Degradation ! Glycogen Degradation [Term] id: PWY-5963 name: molybdenum cofactor (sulfide) biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: PWY-5965 name: fatty acid biosynthesis initiation III is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: PWY-5966 name: fatty acid biosynthesis initiation II is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: PWY-5994 name: palmitate biosynthesis I (animals) is_a: Palmitate-Biosynthesis ! Palmitate Biosynthesis [Term] id: PWY-5996 name: oleate biosynthesis II (animals) is_a: Oleate-Biosynthesis ! Oleate Biosynthesis [Term] id: PWY-6 name: GDP-L-fucose biosynthesis II (from L-fucose) is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis [Term] id: PWY-6000 name: γ-linolenate biosynthesis II (animals) is_a: Gamma-linolenate-Biosynthesis ! γ-linolenate Biosynthesis [Term] id: PWY-6030 name: serotonin and melatonin biosynthesis is_a: HORMONE-SYN ! Hormones Biosynthesis [Term] id: PWY-6061 name: bile acid biosynthesis, neutral pathway is_a: Sterol-Biosynthesis ! Sterol Biosynthesis [Term] id: PWY-6076 name: 1,25-dihydroxyvitamin D3 biosynthesis is_a: HORMONE-SYN ! Hormones Biosynthesis is_a: Vitamin-Biosynthesis ! Vitamins [Term] id: PWY-6100 name: L-carnitine biosynthesis is_a: Metabolic-Regulators ! Metabolic Regulators Biosynthesis [Term] id: PWY-6118 name: glycerol-3-phosphate shuttle is_a: OTHER-ENERGY ! Other [Term] id: PWY-6121 name: 5-aminoimidazole ribonucleotide biosynthesis I is_a: AIR-Biosynthesis ! 5-Aminoimidazole Ribonucleotide Biosynthesis [Term] id: PWY-6122 name: 5-aminoimidazole ribonucleotide biosynthesis II is_a: AIR-Biosynthesis ! 5-Aminoimidazole Ribonucleotide Biosynthesis [Term] id: PWY-6124 name: inosine-5'-phosphate biosynthesis II is_a: IMP-Biosynthesis ! Inosine-5'-phosphate Biosynthesis [Term] id: PWY-6132 name: lanosterol biosynthesis is_a: Sterol-Biosynthesis ! Sterol Biosynthesis [Term] id: PWY-6137 name: copper transport II is_a: Transport-Pathways ! Transport Pathways [Term] id: PWY-6142 name: gluconeogenesis II (Methanobacterium thermoautotrophicum) is_a: Gluconeogenesis ! Gluconeogenesis is_a: Super-Pathways ! Superpathways [Term] id: PWY-6144 name: CMP-N-glycoloylneuraminate biosynthesis is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis [Term] id: PWY-6173 name: histamine biosynthesis is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: PWY-6181 name: histamine degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation [Term] id: PWY-622 name: starch biosynthesis is_a: GLYCOGEN-BIOSYN ! Glucogen and starch biosynthesis [Term] id: PWY-6260 name: thyroid hormone metabolism I (via deiodination) is_a: Thyroid-Hormone-Metabolism ! thyroid hormone metabolism [Term] id: PWY-6268 name: adenosylcobalamin salvage from cobalamin is_a: Adenosylcobalamin-Biosynthesis ! Adenosylcobalamin Biosynthesis [Term] id: PWY-6277 name: superpathway of 5-aminoimidazole ribonucleotide biosynthesis is_a: AIR-Biosynthesis ! 5-Aminoimidazole Ribonucleotide Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY-6281 name: selenocysteine biosynthesis II (archaea and eukaryotes) is_a: Selenocysteine-Biosynthesis ! Selenocysteine Biosynthesis [Term] id: PWY-6292 name: cysteine biosynthesis III (mammalia) is_a: CYSTEINE-SYN ! Cysteine Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY-6309 name: tryptophan degradation XI (mammalian, via kynurenine) is_a: Super-Pathways ! Superpathways is_a: TRYPTOPHAN-DEG ! Tryptophan Degradation [Term] id: PWY-6348 name: phosphate acquisition I is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: PWY-6351 name: D-myo-inositol (1,4,5)-trisphosphate biosynthesis is_a: Cyclitols-Biosynthesis ! Cyclitols Biosynthesis [Term] id: PWY-6352 name: 3-phosphoinositide biosynthesis is_a: Phospholipid-Biosynthesis ! Phospholipid Biosynthesis [Term] id: PWY-6353 name: purine degradation IV (aerobic) is_a: Purine-Degradation ! Purine Degradation [Term] id: PWY-6355 name: phosphate acquisition II is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: PWY-6358 name: superpathway of D-myo-inositol (1,4,5)-trisphosphate metabolism is_a: Cyclitols-Biosynthesis ! Cyclitols Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY-6362 name: 1D-myo-inositol hexakisphosphate biosynthesis II (mammalian) is_a: CYCLITOLS-DEG ! Cyclitols Degradation is_a: Phytate-Biosynthesis ! Phytate Biosynthesis [Term] id: PWY-6363 name: D-myo-inositol (1,4,5)-trisphosphate degradation is_a: Cyclitols-Biosynthesis ! Cyclitols Biosynthesis [Term] id: PWY-6364 name: D-myo-inositol (1,3,4)-trisphosphate biosynthesis is_a: Cyclitols-Biosynthesis ! Cyclitols Biosynthesis [Term] id: PWY-6365 name: D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis is_a: Cyclitols-Biosynthesis ! Cyclitols Biosynthesis [Term] id: PWY-6367 name: D-myo-inositol-5-phosphate metabolism is_a: Cyclitols-Biosynthesis ! Cyclitols Biosynthesis is_a: Phospholipid-Biosynthesis ! Phospholipid Biosynthesis [Term] id: PWY-6405 name: Rapoport-Luebering glycolytic shunt is_a: Metabolic-Regulators ! Metabolic Regulators Biosynthesis [Term] id: PWY-66 name: GDP-L-fucose biosynthesis I (from GDP-D-mannose) is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis [Term] id: PWY-842 name: starch degradation is_a: CARBO-BIOSYNTHESIS ! Sugars Biosynthesis is_a: POLYSACCHARIDES-DEG ! Polysaccharides Degradation [Term] id: PWY-901 name: methylglyoxal degradation II is_a: Aldehyde-Degradation ! Aldehyde Degradation is_a: Methylglyoxal-Detoxification ! Methylglyoxal Detoxification [Term] id: PWY-922 name: mevalonate pathway I is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis is_a: ISOPRENOIDS ! Hemiterpenes Biosynthesis is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY0-1182 name: trehalose degradation II (trehalase) is_a: Trehalose-Degradation ! Trehalose Degradation [Term] id: PWY0-1264 name: biotin-carboxyl carrier protein assembly is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY0-1275 name: lipoate biosynthesis and incorporation II is_a: Lipoate-Biosynthesis ! Lipoate Biosynthesis [Term] id: PWY0-1295 name: degradation of pyrimidine ribonucleosides is_a: NUCLEO-DEG ! Nucleosides and Nucleotides Degradation and Recycling [Term] id: PWY0-1296 name: degradation of purine ribonucleosides is_a: NUCLEO-DEG ! Nucleosides and Nucleotides Degradation and Recycling [Term] id: PWY0-1298 name: pyrimidine deoxyribonucleosides degradation is_a: NUCLEO-DEG ! Nucleosides and Nucleotides Degradation and Recycling [Term] id: PWY0-1301 name: melibiose degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: PWY0-1313 name: acetate conversion to acetyl-CoA is_a: CARBOXYLATES-DEG ! Carboxylates Degradation [Term] id: PWY0-1319 name: CDP-diacylglycerol biosynthesis II is_a: CDP-diacylglycerol-Biosynthesis ! CDP-diacylglycerol Biosynthesis [Term] id: PWY0-1324 name: N-acetylneuraminate and N-acetylmannosamine degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: PWY0-1334 name: NADH to cytochrome bd oxidase electron transfer is_a: AEROBIC-RESPIRATION ! Aerobic Respiration is_a: Electron-Transfer ! Electron Transfer [Term] id: PWY0-1335 name: NADH to cytochrome bo oxidase electron transfer is_a: AEROBIC-RESPIRATION ! Aerobic Respiration is_a: Electron-Transfer ! Electron Transfer [Term] id: PWY0-162 name: pyrimidine ribonucleotides de novo biosynthesis is_a: PYR-NUC-SYN ! Pyrimidine Nucleotide Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY0-163 name: salvage pathways of pyrimidine ribonucleotides is_a: PYR-NUC-SYN ! Pyrimidine Nucleotide Biosynthesis [Term] id: PWY0-166 name: pyrimidine deoxyribonucleotides de novo biosynthesis is_a: PYR-NUC-SYN ! Pyrimidine Nucleotide Biosynthesis [Term] id: PWY0-181 name: salvage pathways of pyrimidine deoxyribonucleotides is_a: PYR-NUC-SYN ! Pyrimidine Nucleotide Biosynthesis [Term] id: PWY0-321 name: phenylacetate degradation I (aerobic) is_a: Phenylacetate-Degradation ! Phenylacetate Degradation [Term] id: PWY0-501 name: lipoate biosynthesis and incorporation I is_a: Lipoate-Biosynthesis ! Lipoate Biosynthesis [Term] id: PWY0-662 name: PRPP biosynthesis I is_a: PRPP-Biosynthesis ! PRPP Biosynthesis [Term] id: PWY0-823 name: arginine degradation III (arginine decarboxylase/agmatinase pathway) is_a: ARGININE-DEG ! Arginine Degradation is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: PWY0-862 name: cis-dodecenoyl biosynthesis is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: PWY3DJ-0 name: isoleucine degradation is_a: ISOLEUCINE-DEG ! Isoleucine Degradation [Term] id: PWY3DJ-1 name: cyclic AMP biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis is_a: Nucleotide-Biosynthesis ! Nucleosides and Nucleotides Biosynthesis [Term] id: PWY3DJ-11281 name: sphingomyelin metabolism is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY3DJ-11470 name: sphingosine and sphingosine-1-phosphate metabolism is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY3DJ-12 name: ceramide biosynthesis is_a: Fatty-Acid-and-Lipid-Degradation ! Fatty Acid and Lipids Degradation is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY3DJ-1574 name: TCA cycle and malate/aspartate shuttle superpathway is_a: Super-Pathways ! Superpathways [Term] id: PWY3DJ-193 name: Leloir pathway is_a: GALACTOSE-DEGRADATION ! Galactose Degradation [Term] id: PWY3DJ-2 name: biosynthesis of estrogens is_a: HORMONE-SYN ! Hormones Biosynthesis [Term] id: PWY3DJ-213 name: Targeted protein degradation is_a: Polymer-Degadation ! Polymeric Compounds Degradation [Term] id: PWY3DJ-34120 name: leucine degradation is_a: LEUCINE-DEG ! Leucine Degradation [Term] id: PWY3DJ-35471 name: L-ascorbate biosynthesis VI is_a: Ascorbate-Biosynthesis ! Ascorbate Biosynthesis [Term] id: PWY3DJ-35549 name: Biopterin recycling is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: PWY3DJ-35583 name: biosynthesis of prostaglandins is_a: HORMONE-SYN ! Hormones Biosynthesis [Term] id: PWY3DJ-35588 name: creatine biosynthesis is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: PWY3DJ-35778 name: Serine degradation II is_a: SERINE-DEG ! Serine Degradation [Term] id: PWY3DJ-35888 name: sulfur metabolism is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: PWY3DJ-4 name: biosynthesis of corticosteroids is_a: HORMONE-SYN ! Hormones Biosynthesis [Term] id: PWY3DJ-471 name: creatine-phosphate energy transfer is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: PWY3DJ-5 name: biosynthesis of serotonin and melatonin is_a: HORMONE-SYN ! Hormones Biosynthesis [Term] id: PWY3DJ-5523 name: sucrose degradation is_a: SUCROSE-DEG ! Sucrose Degradation [Term] id: PWY3DJ-6 name: Leucine Catabolism is_a: LEUCINE-DEG ! Leucine Degradation [Term] id: PWY3DJ-7 name: cyclic GMP biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis is_a: Nucleotide-Biosynthesis ! Nucleosides and Nucleotides Biosynthesis [Term] id: PWY3DJ-8 name: biosynthesis of androgens is_a: HORMONE-SYN ! Hormones Biosynthesis [Term] id: PWY3DJ-81 name: riboflavin, FMN and FAD transformations is_a: Vitamin-Biosynthesis ! Vitamins [Term] id: PWY3DJ-86 name: valine degradation is_a: VALINE-DEG ! Valine Degradation [Term] id: PWY3FA-1022 name: ketone oxidation is_a: Fatty-Acid-Degradation ! Fatty Acids Degradation [Term] id: PWY3FA-941 name: ketogenesis is_a: Energy-Metabolism ! Generation of precursor metabolites and energy is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: PWY3O-19 name: ubiquinone-6 biosynthesis (eukaryotic) is_a: Ubiquinone-Biosynthesis ! Ubiquinone Biosynthesis [Term] id: PWY3O-4106 name: NAD salvage pathway III is_a: NAD-SYN ! NAD Biosynthesis [Term] id: PWY3O-4108 name: tyrosine degradation III is_a: TYROSINE-DEG ! Tyrosine Degradation [Term] id: PWY3O-450 name: phosphatidylcholine biosynthesis I is_a: PhosphatidylcholineBiosynthesis ! PhosphatidylcholineBiosynthesis [Term] id: PWY4FS-6 name: phosphatidylethanolamine biosynthesis II is_a: PhosphatidylethanolamineBiosynthesis ! PhosphatidylethanolamineBiosynthesis [Term] id: PWY4FS-7 name: phosphatidylglycerol biosynthesis I (plastid) is_a: PhosphatidylglycerolBiosynthesis ! PhosphatidylglycerolBiosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY4FS-8 name: phosphatidylglycerol biosynthesis II is_a: PhosphatidylglycerolBiosynthesis ! PhosphatidylglycerolBiosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY66-201 name: nicotine degradation II is_a: Nicotine-Degradation ! Nicotine Degradation [Term] id: PWY66-21 name: oxidative ethanol degradation I is_a: Ethanol-Degradation ! Ethanol Degradation [Term] id: PWY66-221 name: nicotine degradation III is_a: Nicotine-Degradation ! Nicotine Degradation [Term] id: PWY66-241 name: bupropion degradation is_a: Other-Degradation ! Degradation/Utilization/Assimilation - Other [Term] id: PWY66-3 name: cholesterol biosynthesis II (via 24,25-dihydrolanosterol) is_a: Sterol-Biosynthesis ! Sterol Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY66-301 name: catecholamine biosynthesis is_a: HORMONE-SYN ! Hormones Biosynthesis [Term] id: PWY66-341 name: cholesterol biosynthesis I is_a: Sterol-Biosynthesis ! Sterol Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY66-4 name: cholesterol biosynthesis III (via desmosterol) is_a: Sterol-Biosynthesis ! Sterol Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY66-5 name: superpathway of cholesterol biosynthesis is_a: Sterol-Biosynthesis ! Sterol Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: PWY6666-1 name: anandamide degradation is_a: Fatty-Acid-and-Lipid-Degradation ! Fatty Acid and Lipids Degradation [Term] id: PWY6666-2 name: dopamine degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation [Term] id: PYR-NUC-SYN name: Pyrimidine Nucleotide Biosynthesis is_a: Nucleotide-Biosynthesis ! Nucleosides and Nucleotides Biosynthesis [Term] id: PYRNUCYC-PWY name: pyridine nucleotide cycling is_a: NAD-SYN ! NAD Biosynthesis [Term] id: PYRROLIDINE-ALKALOIDS name: Pyrrolidine, Piperidine and Pyridine alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: PYRROLIZIDINE-ALKALOIDS name: Pyrrolizidine alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: Pyruvate-Degradation name: Pyruvate Fermentation is_a: Fermentation ! Fermentation [Term] id: PYRUVDEHYD-PWY name: acetyl-CoA biosynthesis (from pyruvate) is_a: CARBOXYLATES-DEG ! Carboxylates Degradation is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: Quinate-Degradation name: Quinate Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: QUINOLINE-ALKALOIDS name: Quinoline alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: QUINOLIZIDINE-ALKALOIDS name: Quinolizidine alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: Quinone-Biosynthesis name: Quinone Biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: QUINONE-SYN name: Quinones Biosynthesis is_a: PHENYLPROPANOID-SYN ! Phenylpropanoid Derivatives Biosynthesis [Term] id: Reductants name: Reductants Biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: Reductive-TCA-Cycles name: Reductive TCA Cycles is_a: Autotrophic-CO2-Fixation ! Autotrophic CO2 Fixation [Term] id: Resin-Acids-Biosynthesis name: Resin Acids Biosynthesis is_a: DITERPENOID-SYN ! Diterpenoids Biosynthesis [Term] id: Respiration name: Respiration is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: Rhamnose-Biosynthesis name: Rhamnose Biosynthesis is_a: SUGAR-NUCLEOTIDES ! Sugar Nucleotides Biosynthesis [Term] id: Rhodoquinone-Biosynthesis name: Rhodoquinone Biosynthesis is_a: Quinone-Biosynthesis ! Quinone Biosynthesis [Term] id: RIBOKIN-PWY name: ribose degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: RIBOSYN2-PWY name: flavin biosynthesis I (bacteria) is_a: Flavin-Biosynthesis ! Flavin Biosynthesis [Term] id: RUMP-PWY name: formaldehyde oxidation I is_a: Formaldehyde-Oxidation ! Formaldehyde Oxidation [Term] id: S-adenosyl-L-methionine-cycle name: S-adenosyl-L-methionine cycle is_a: METHIONINE-SYN ! Methionine Biosynthesis [Term] id: s-Triazine-Degradation name: s-Triazine Degredation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Salicylate-Biosynthesis name: Salicylate Biosynthesis is_a: BENZENOID-SYN ! Benzenoids Biosynthesis [Term] id: Salicylate-Degradation name: Salicylate Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: SALVADEHYPOX-PWY name: salvage pathways of adenine, hypoxanthine, and their nucleosides is_a: Purine-Nucleotides-Salvage ! Purine Nucleotide Salvage [Term] id: SALVPURINE2-PWY name: salvage pathways of guanine, xanthine, and their nucleosides is_a: Purine-Nucleotides-Salvage ! Purine Nucleotide Salvage [Term] id: SAM-PWY name: S-adenosylmethionine biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: SECONDARY-CELL-WALL name: Secondary cell wall is_a: PLANT-CELL-STRUCTURE ! Plant cell structures [Term] id: SECONDARY-METABOLITE-BIOSYNTHESIS name: Secondary Metabolites Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: SECONDARY-METABOLITE-DEGRADATION name: Secondary Metabolites Degradation is_a: Degradation ! Degradation/Utilization/Assimilation [Term] id: Selenocysteine-Biosynthesis name: Selenocysteine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: SER-GLYSYN-PWY name: superpathway of serine and glycine biosynthesis I is_a: Amino-Acid-Biosynthesis ! Amino acids Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: SERDEG-PWY name: L-serine degradation is_a: SERINE-DEG ! Serine Degradation [Term] id: SERINE-BIOSYNTHESIS name: Serine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: SERINE-DEG name: Serine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: SERSYN-PWY name: serine biosynthesis is_a: SERINE-BIOSYNTHESIS ! Serine Biosynthesis [Term] id: Sesquiterpenoid-Degradation name: Sesquiterpenoids Degradation is_a: TERPENOID-DEG ! Terpenoids Degradation [Term] id: SESQUITERPENOID-SYN name: Sesquiterpenoids Biosynthesis is_a: Terpenoid-Biosynthesis ! Terpenoids Biosynthesis [Term] id: Shikimate-Degradation name: Shikimate Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Siderophores-Biosynthesis name: Siderophore Biosynthesis is_a: Biosynthesis ! Biosynthesis [Term] id: Signaling-Pathways name: Signal transduction pathways is_a: Pathways ! Pathways [Term] id: Sorbitol-Biosynthesis name: Sorbitol Biosynthesis is_a: Sugar-Alcohols-Biosynthesis ! Sugar Alcohols Biosynthesis [Term] id: SPHINGOLIPID-SYN-PWY name: sphingolipid metabolism is_a: Fatty-Acid-and-Lipid-Degradation ! Fatty Acid and Lipids Degradation is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: Stearate-Biosynthesis name: Stearate Biosynthesis is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: Sterol-Biosynthesis name: Sterol Biosynthesis is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: STILBENE-PHYTOALEXINS name: Stilbene Phytoalexins Biosynthesis is_a: PHYTOALEXIN-SYN ! Phytoalexins Biosynthesis [Term] id: STILBENE-SYN name: Stilbenes Biosynthesis is_a: PHENYLPROPANOID-SYN ! Phenylpropanoid Derivatives Biosynthesis [Term] id: SUCC-DEG name: Succinate Degradation is_a: CARBOXYLATES-DEG ! Carboxylates Degradation [Term] id: SUCROSE-DEG name: Sucrose Degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: SUGAR-ACIDS-DEG name: Sugar Acids Degradation is_a: Sugar-Derivatives ! Sugar Derivatives Degradation [Term] id: Sugar-Alcohols-Biosynthesis name: Sugar Alcohols Biosynthesis is_a: CARBO-BIOSYNTHESIS ! Sugars Biosynthesis [Term] id: SUGAR-ALCOHOLS-DEG name: Sugar Alcohols Degradation is_a: Sugar-Derivatives ! Sugar Derivatives Degradation [Term] id: Sugar-Derivatives name: Sugar Derivatives Degradation is_a: SECONDARY-METABOLITE-DEGRADATION ! Secondary Metabolites Degradation [Term] id: SUGAR-DERIVS name: Sugar Derivatives Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: SUGAR-NUCLEOTIDES name: Sugar Nucleotides Biosynthesis is_a: CARBO-BIOSYNTHESIS ! Sugars Biosynthesis [Term] id: Sugars-And-Polysaccharides name: Sugars Degradation is_a: Carbohydrates-Degradation ! Carbohydrates Degradation [Term] id: Sulfate-Reduction name: Sulfate Reduction is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Sulfide-Oxidation name: Sulfide Oxidation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Sulfite-Oxidation name: Sulfite Oxidation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Sulfoacetaldehyde-Degradation name: Sulfoacetaldehyde Degradation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Sulfoaromatics-Degradation name: Sulfoaromatic Compounds Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Sulfur-Assimilation name: Sulfur Compounds Metabolism is_a: Noncarbon-Nutrients ! Inorganic Nutrients Metabolism [Term] id: Sulfur-Disproportionation name: Sulfur Disproportionation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Sulfur-Oxidation name: Sulfur Oxidation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Sulfur-reduction name: Sulfur Reduction is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Super-Pathways name: Superpathways is_a: Pathways ! Pathways [Term] id: TANNIN-SYN name: Hydrolyzable Tannins Biosynthesis is_a: PHENYLPROPANOID-SYN ! Phenylpropanoid Derivatives Biosynthesis [Term] id: Taurine-degradation name: Taurine Degradation is_a: MISCELLANEOUS-DEG ! Miscellaneous Amino Acids Degradation [Term] id: TCA-1 name: TCA cycle is_a: TCA-VARIANTS ! TCA cycle [Term] id: TCA-VARIANTS name: TCA cycle is_a: Energy-Metabolism ! Generation of precursor metabolites and energy [Term] id: TERPENOID-ALKALOIDS name: Terpenoid Alkaloids Biosynthesis is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis is_a: Terpenoid-Biosynthesis ! Terpenoids Biosynthesis [Term] id: Terpenoid-Biosynthesis name: Terpenoids Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: TERPENOID-DEG name: Terpenoids Degradation is_a: SECONDARY-METABOLITE-DEGRADATION ! Secondary Metabolites Degradation [Term] id: TERPENOID-PHYTOALEXINS name: Terpenoid Phytoalexins Biosynthesis is_a: PHYTOALEXIN-SYN ! Phytoalexins Biosynthesis [Term] id: TERPENOPHENOLICS-SYN name: Terpenophenolics Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: Tetrahydrobiopterin-Biosynthesis name: Tetrahydrobiopterin Biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: Tetrapyrrole-Biosynthesis name: Tetrapyrrole Biosynthesis is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: Tetraterpenoid-Degradation name: Tetraterpenoids Degradation is_a: TERPENOID-DEG ! Terpenoids Degradation [Term] id: TETRATERPENOID-SYN name: Tetraterpenoids Biosynthesis is_a: Terpenoid-Biosynthesis ! Terpenoids Biosynthesis [Term] id: Tetrathionate-Oxidation name: Tetrathionate Oxidation is_a: AEROBIC-RESPIRATION ! Aerobic Respiration [Term] id: Tetrathionate-Reduction name: Tetrathionate Reduction is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Thiamine-Biosynthesis name: Thiamine Biosynthesis is_a: Vitamin-Biosynthesis ! Vitamins [Term] id: Thiocyanate-Degradation name: Thiocyanate Degradation is_a: Other-Degradation ! Degradation/Utilization/Assimilation - Other [Term] id: THIOREDOX-PWY name: thioredoxin pathway is_a: Reductants ! Reductants Biosynthesis [Term] id: Thiosulfate-Disproportionation name: Thiosulfate Disproportionation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: Thiosulfate-Oxidation name: Thiosulfate Oxidation is_a: Sulfur-Assimilation ! Sulfur Compounds Metabolism [Term] id: THRDLCTCAT-PWY name: threonine degradation III (to methylglyoxal) is_a: THREONINE-DEG ! Threonine Degradation [Term] id: THREONINE-BIOSYNTHESIS name: Threonine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: THREONINE-DEG name: Threonine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: Thyroid-Hormone-Metabolism name: thyroid hormone metabolism is_a: HORMONE-DEG ! Hormones Degradation [Term] id: TOLUENE-DEG name: Toluenes Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Transport-Pathways name: Transport Pathways is_a: Pathways ! Pathways [Term] id: Trehalose-biosynthesis name: Trehalose biosynthesis is_a: CARBO-BIOSYNTHESIS ! Sugars Biosynthesis [Term] id: Trehalose-Degradation name: Trehalose Degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation [Term] id: TRIGLSYN-PWY name: triacylglycerol biosynthesis is_a: Lipid-Biosynthesis ! Fatty Acids and Lipids Biosynthesis [Term] id: TRITERPENOID-SYN name: Triterpenoids Biosynthesis is_a: Terpenoid-Biosynthesis ! Terpenoids Biosynthesis [Term] id: TRNA-CHARGING-PWY name: tRNA charging pathway is_a: Aminoacyl-tRNAs-Charging ! Aminoacyl-tRNA Charging [Term] id: TROPANE-ALKALOIDS name: Tropane alkaloids is_a: ALKALOIDS-SYN ! Alkaloids Biosynthesis [Term] id: TRPCAT-PWY name: tryptophan degradation I (via anthranilate) is_a: TRYPTOPHAN-DEG ! Tryptophan Degradation [Term] id: TRYPTOPHAN-BIOSYNTHESIS name: Tryptophan Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: TRYPTOPHAN-DEG name: Tryptophan Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: TRYPTOPHAN-DEGRADATION-1 name: tryptophan degradation III (eukaryotic) is_a: Super-Pathways ! Superpathways is_a: TRYPTOPHAN-DEG ! Tryptophan Degradation [Term] id: TYRFUMCAT-PWY name: tyrosine degradation I is_a: TYROSINE-DEG ! Tyrosine Degradation [Term] id: TYROSINE-DEG name: Tyrosine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: TYROSINE-SYN name: Tyrosine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: TYRSYN2 name: tyrosine biosynthesis II is_a: TYROSINE-SYN ! Tyrosine Biosynthesis [Term] id: Ubiquinone-Biosynthesis name: Ubiquinone Biosynthesis is_a: Quinone-Biosynthesis ! Quinone Biosynthesis [Term] id: UDP-Nac-Galactosamine-Biosynthesis name: UDP-N-acetyl-D-galactosamine Biosynthesis is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: UDP-NAc-Glucosamine-Biosynthesis name: UDP-N-acetyl-D-glucosamine Biosynthesis is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis [Term] id: UDPNACETYLGALSYN-PWY name: UDP-N-acetyl-D-glucosamine biosynthesis II is_a: UDP-NAc-Glucosamine-Biosynthesis ! UDP-N-acetyl-D-glucosamine Biosynthesis [Term] id: Unusual-fatty-acid-biosynthesis name: Unusual Fatty Acid Biosynthesis is_a: Fatty-acid-biosynthesis ! Fatty Acid Biosynthesis [Term] id: Urate-Degradation name: Urate Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Urea-Degradation name: Urea Degradation is_a: AMINE-DEG ! Amines and Polyamines Degradation [Term] id: URSIN-PWY name: ureide biosynthesis is_a: Polyamine-Biosynthesis ! Amines and Polyamines Biosynthesis is_a: Super-Pathways ! Superpathways [Term] id: VALINE-BIOSYNTHESIS name: Valine Biosynthesis is_a: IND-AMINO-ACID-SYN ! Individual Amino Acids Biosynthesis [Term] id: VALINE-DEG name: Valine Degradation is_a: Amino-Acid-Degradation ! Amino Acids Degradation [Term] id: Vitamin-B6-Biosynthesis name: Vitamin B6 Biosynthesis is_a: Vitamin-Biosynthesis ! Vitamins [Term] id: Vitamin-Biosynthesis name: Vitamins is_a: Cofactor-Biosynthesis ! Cofactors, Prosthetic Groups, Electron Carriers Biosynthesis [Term] id: XANTHONE-DEG name: Xanthones Degradation is_a: SECONDARY-METABOLITE-DEGRADATION ! Secondary Metabolites Degradation [Term] id: XANTHONE-SYN name: Xanthones Biosynthesis is_a: SECONDARY-METABOLITE-BIOSYNTHESIS ! Secondary Metabolites Biosynthesis [Term] id: Xylene-Degradation name: Xylene Degradation is_a: AROMATIC-COMPOUNDS-DEGRADATION ! Aromatic Compounds Degradation [Term] id: Xylose-Degradation name: Xylose Degradation is_a: Sugars-And-Polysaccharides ! Sugars Degradation