Gene Expression Literature Summary
|
Symbol Name ID |
Vim
vimentin MGI:98932 |
| Age | E0.5 | E2.5 | E3.5 | E4.5 | E5.5 | E6.5 | E7.5 | E8 | E8.5 | E9 | E9.5 | E10 | E10.5 | E11 | E11.5 | E12 | E12.5 | E13 | E13.5 | E14 | E14.5 | E15 | E15.5 | E16 | E16.5 | E17 | E17.5 | E18 | E18.5 | E19 | E19.5 | E | P |
| Immunohistochemistry (section) | 1 | 5 | 1 | 3 | 4 | 11 | 1 | 17 | 2 | 19 | 4 | 40 | 3 | 27 | 6 | 55 | 10 | 35 | 9 | 25 | 5 | 34 | 4 | 37 | 3 | 1 | 10 | 161 | |||||
| In situ RNA (section) | 1 | 1 | 1 | 2 | 4 | 2 | 2 | 1 | 1 | 5 | 1 | 2 | 1 | 3 | 6 | ||||||||||||||||||
| Immunohistochemistry (whole mount) | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | |||||||||||||||
| In situ RNA (whole mount) | 1 | 3 | 1 | 1 | |||||||||||||||||||||||||||||
| In situ reporter (knock in) | 1 | 1 | |||||||||||||||||||||||||||||||
| Northern blot | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 5 | |||||||||||||||||||||||||
| Western blot | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 11 | ||||||||||||||||||
| RT-PCR | 1 | 1 | 1 | 1 | 5 | 4 | 5 | 2 | 3 | 3 | 1 | 9 | 5 | 2 | 3 | 3 | 4 | 2 | 23 | ||||||||||||||
| cDNA clones | 1 | 1 | 1 |
| Vim vimentin | |
| Results | Reference |
| 1 | J:331266 Abou Nader N, Menard A, Levasseur A, St-Jean G, Boerboom D, Zamberlam G, Boyer A, Targeted Disruption of Lats1 and Lats2 in Mice Impairs Testis Development and Alters Somatic Cell Fate. Int J Mol Sci. 2022 Nov 5;23(21) |
| 2* | J:325730 Ahuja N, Hiltabidle MS, Rajasekhar H, Voss S, Lu SZ, Barlow HR, Cowdin MA, Daniel E, Vaddaraju V, Anandakumar T, Black E, Cleaver O, Maynard C, Endothelial Cyp26b1 restrains murine heart valve growth during development. Dev Biol. 2022 Jun;486:81-95 |
| 1 | J:314128 Alcada-Morais S, Goncalves N, Moreno-Juan V, Andres B, Ferreira S, Marques JM, Magalhaes J, Rocha JMM, Xu X, Partidario M, Cunha RA, Lopez-Bendito G, Rodrigues RJ, Adenosine A2A Receptors Contribute to the Radial Migration of Cortical Projection Neurons through the Regulation of Neuronal Polarization and Axon Formation. Cereb Cortex. 2021 Oct 22;31(12):5652-5663 |
| 1 | J:262618 Aldeiri B, Roostalu U, Albertini A, Behnsen J, Wong J, Morabito A, Cossu G, Abrogation of TGF-beta signalling in TAGLN expressing cells recapitulates Pentalogy of Cantrell in the mouse. Sci Rep. 2018 Feb 26;8(1):3658 |
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| 1 | J:281278 Andersen RE, Hong SJ, Lim JJ, Cui M, Harpur BA, Hwang E, Delgado RN, Ramos AD, Liu SJ, Blencowe BJ, Lim DA, The Long Noncoding RNA Pnky Is a Trans-acting Regulator of Cortical Development In Vivo. Dev Cell. 2019 May 20;49(4):632-642.e7 |
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| 2 | J:220460 Andre P, Song H, Kim W, Kispert A, Yang Y, Wnt5a and Wnt11 regulate mammalian anterior-posterior axis elongation. Development. 2015 Apr 15;142(8):1516-27 |
| 2* | J:29480 Aoki K, Osumi-Yamashita N, Ninomiya Y, Eto K, Differential expression of N-CAM, vimentin and MAP1B during initial pathfinding of olfactory receptor neurons in the mouse embryo. Anat Embryol (Berl). 1995 Sep;192(3):211-20 |
| 1* | J:279777 Arno B, Galli F, Roostalu U, Aldeiri BM, Miyake T, Albertini A, Bragg L, Prehar S, McDermott JC, Cartwright EJ, Cossu G, TNAP limits TGF-beta-dependent cardiac and skeletal muscle fibrosis by inactivating the SMAD2/3 transcription factors. J Cell Sci. 2019 Aug 8;132(15):jcs234948 |
| 1 | J:253754 Arora H, Boulberdaa M, Qureshi R, Bitirim V, Gasser A, Messaddeq N, Dolle P, Nebigil CG, Prokineticin receptor-1 signaling promotes Epicardial to Mesenchymal Transition during heart development. Sci Rep. 2016 May 6;6:25541 |
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| 1* | J:342549 Bai Y, Bentley L, Ma C, Naveenan N, Cleak J, Wu Y, Simon MM, Westerberg H, Canas RC, Horner N, Pandey R, Paphiti K, Schulze U, Mianne J, Hough T, Teboul L, de Baaij JHF, Cox RD, Cleft palate and minor metabolic disturbances in a mouse global Arl15 gene knockout. FASEB J. 2023 Nov;37(11):e23211 |
| 1 | J:327292 Bakhti M, Bastidas-Ponce A, Tritschler S, Czarnecki O, Tarquis-Medina M, Nedvedova E, Jaki J, Willmann SJ, Scheibner K, Cota P, Salinno C, Boldt K, Horn N, Ueffing M, Burtscher I, Theis FJ, Coskun U, Lickert H, Synaptotagmin-13 orchestrates pancreatic endocrine cell egression and islet morphogenesis. Nat Commun. 2022 Aug 4;13(1):4540 |
| 1 | J:354227 Barao S, Xu Y, Llongueras JP, Vistein R, Goff L, Nielsen KJ, Bae BI, Smith RS, Walsh CA, Stein-O'Brien G, Muller U, Conserved transcriptional regulation by BRN1 and BRN2 in neocortical progenitors drives mammalian neural specification and neocortical expansion. Nat Commun. 2024 Sep 14;15(1):8043 |
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| 1 | J:305458 Bertacchi M, Romano AL, Loubat A, Tran Mau-Them F, Willems M, Faivre L, Khau van Kien P, Perrin L, Devillard F, Sorlin A, Kuentz P, Philippe C, Garde A, Neri F, Di Giaimo R, Oliviero S, Cappello S, D'Incerti L, Frassoni C, Studer M, NR2F1 regulates regional progenitor dynamics in the mouse neocortex and cortical gyrification in BBSOAS patients. EMBO J. 2020 Jul 1;39(13):e104163 |
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| 1* | J:174391 Besson V, Smeriglio P, Wegener A, Relaix F, Nait Oumesmar B, Sassoon DA, Marazzi G, PW1 gene/paternally expressed gene 3 (PW1/Peg3) identifies multiple adult stem and progenitor cell populations. Proc Natl Acad Sci U S A. 2011 Jul 12;108(28):11470-5 |
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| 1 | J:282886 Blackwood CA, Jagged1 is Essential for Radial Glial Maintenance in the Cortical Proliferative Zone. Neuroscience. 2019 Aug 10;413:230-238 |
| 6* | J:134646 Boekhoorn K, Sarabdjitsingh A, Kommerie H, de Punder K, Schouten T, Lucassen PJ, Vreugdenhil E, Doublecortin (DCX) and doublecortin-like (DCL) are differentially expressed in the early but not late stages of murine neocortical development. J Comp Neurol. 2008 Apr 1;507(4):1639-52 |
| 1 | J:248734 Bolt CC, Negi S, Guimaraes-Camboa N, Zhang H, Troy JM, Lu X, Kispert A, Evans SM, Stubbs L, Tbx18 Regulates the Differentiation of Periductal Smooth Muscle Stroma and the Maintenance of Epithelial Integrity in the Prostate. PLoS One. 2016;11(4):e0154413 |
| 1 | J:156272 Bonilla S, Hall AC, Pinto L, Attardo A, Gotz M, Huttner WB, Arenas E, Identification of midbrain floor plate radial glia-like cells as dopaminergic progenitors. Glia. 2008 Jun;56(8):809-20 |
| 1 | J:309347 Botella-Lopez A, Garcia-Lopez R, Pombero A, Martinez S, Radial glia fibers translate Fgf8 morphogenetic signals to generate a thalamic nuclear complex protomap in the mantle layer. Brain Struct Funct. 2019 Mar;224(2):661-679 |
| 1 | J:239777 Boucherat O, Landry-Truchon K, Berube-Simard FA, Houde N, Beuret L, Lezmi G, Foulkes WD, Delacourt C, Charron J, Jeannotte L, Epithelial inactivation of Yy1 abrogates lung branching morphogenesis. Development. 2015 Sep 01;142(17):2981-95 |
| 1* | J:226923 Bowen CJ, Zhou J, Sung DC, Butcher JT, Cadherin-11 coordinates cellular migration and extracellular matrix remodeling during aortic valve maturation. Dev Biol. 2015 Nov 1;407(1):145-57 |
| 1 | J:279716 Braitsch CM, Azizoglu DB, Htike Y, Barlow HR, Schnell U, Chaney CP, Carroll TJ, Stanger BZ, Cleaver O, LATS1/2 suppress NFkappaB and aberrant EMT initiation to permit pancreatic progenitor differentiation. PLoS Biol. 2019 Jul;17(7):e3000382 |
| 2 | J:330973 Brault JB, Bardin S, Lampic M, Carpentieri JA, Coquand L, Penisson M, Lachuer H, Victoria GS, Baloul S, El Marjou F, Boncompain G, Miserey-Lenkei S, Belvindrah R, Fraisier V, Francis F, Perez F, Goud B, Baffet AD, RAB6 and dynein drive post-Golgi apical transport to prevent neuronal progenitor delamination. EMBO Rep. 2022 Oct 6;23(10):e54605 |
| 1 | J:310311 Braun SMG, Petrova R, Tang J, Krokhotin A, Miller EL, Tang Y, Panagiotakos G, Crabtree GR, BAF subunit switching regulates chromatin accessibility to control cell cycle exit in the developing mammalian cortex. Genes Dev. 2021 Mar 1;35(5-6):335-353 |
| 1 | J:297574 Bres EE, Safina D, Muller J, Bedner P, Yang H, Helluy X, Shchyglo O, Jansen S, Mark MD, Esser A, Steinhauser C, Herlitze S, Pietrzik CU, Sirko S, Manahan-Vaughan D, Faissner A, Lipoprotein receptor loss in forebrain radial glia results in neurological deficits and severe seizures. Glia. 2020 Dec;68(12):2517-2549 |
| 1 | J:240157 Breuss M, Fritz T, Gstrein T, Chan K, Ushakova L, Yu N, Vonberg FW, Werner B, Elling U, Keays DA, Mutations in the murine homologue of TUBB5 cause microcephaly by perturbing cell cycle progression and inducing p53-associated apoptosis. Development. 2016 Apr 01;143(7):1126-33 |
| 1 | J:70746 Brown NL, Patel S, Brzezinski J, Glaser T, Math5 is required for retinal ganglion cell and optic nerve formation. Development. 2001 Jul;128(13):2497-508 |
| 2 | J:199451 Brunne B, Franco S, Bouche E, Herz J, Howell BW, Pahle J, Muller U, May P, Frotscher M, Bock HH, Role of the postnatal radial glial scaffold for the development of the dentate gyrus as revealed by reelin signaling mutant mice. Glia. 2013 Aug;61(8):1347-63 |
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| 1 | J:32083 Burmeister M, Novak J, Liang MY, Basu S, Ploder L, Hawes NL, Vidgen D, Hoover F, Goldman D, Kalnins VI, Roderick TH, Taylor BA, Hankin MH, McInnes RR, Ocular retardation mouse caused by Chx10 homeobox null allele: impaired retinal progenitor proliferation and bipolar cell differentiation. Nat Genet. 1996 Apr;12(4):376-84 |
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| 1 | J:205073 Cano E, Carmona R, Munoz-Chapuli R, Wt1-expressing progenitors contribute to multiple tissues in the developing lung. Am J Physiol Lung Cell Mol Physiol. 2013 Aug 15;305(4):L322-32 |
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| 1 | J:300611 Carper MB, Troutman S, Wagner BL, Byrd KM, Selitsky SR, Parag-Sharma K, Henry EC, Li W, Parker JS, Montgomery SA, Cleveland JL, Williams SE, Kissil JL, Hayes DN, Amelio AL, An Immunocompetent Mouse Model of HPV16(+) Head and Neck Squamous Cell Carcinoma. Cell Rep. 2019 Nov 5;29(6):1660-1674.e7 |
| 3 | J:289977 Carpinelli MR, de Vries ME, Auden A, Butt T, Deng Z, Partridge DD, Miles LB, Georgy SR, Haigh JJ, Darido C, Brabletz S, Brabletz T, Stemmler MP, Dworkin S, Jane SM, Inactivation of Zeb1 in GRHL2-deficient mouse embryos rescues mid-gestation viability and secondary palate closure. Dis Model Mech. 2020 Jan 31;:dmm042218 |
| 4 | J:332132 Cattaneo P, Hayes MGB, Baumgarten N, Hecker D, Peruzzo S, Aslan GS, Kunderfranco P, Larcher V, Zhang L, Contu R, Fonseca G, Spinozzi S, Chen J, Condorelli G, Dimmeler S, Schulz MH, Heinz S, Guimaraes-Camboa N, Evans SM, DOT1L regulates chamber-specific transcriptional networks during cardiogenesis and mediates postnatal cell cycle withdrawal. Nat Commun. 2022 Dec 2;13(1):7444 |
| 1 | J:209678 Chandramouli A, Hatsell SJ, Pinderhughes A, Koetz L, Cowin P, Gli activity is critical at multiple stages of embryonic mammary and nipple development. PLoS One. 2013;8(11):e79845 |
| 1* | J:228706 Chandramouli A, Simundza J, Pinderhughes A, Hiremath M, Droguett G, Frendewey D, Cowin P, Ltbp1L is focally induced in embryonic mammary mesenchyme, demarcates the ductal luminal lineage and is upregulated during involution. Breast Cancer Res. 2013;15(6):R111 |
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| 1 | J:224504 Chen JF, Zhang Y, Wilde J, Hansen KC, Lai F, Niswander L, Microcephaly disease gene Wdr62 regulates mitotic progression of embryonic neural stem cells and brain size. Nat Commun. 2014;5:3885 |
| 1 | J:273987 Chen PY, Qin L, Barnes C, Charisse K, Yi T, Zhang X, Ali R, Medina PP, Yu J, Slack FJ, Anderson DG, Kotelianski V, Wang F, Tellides G, Simons M, FGF regulates TGF-beta signaling and endothelial-to-mesenchymal transition via control of let-7 miRNA expression. Cell Rep. 2012 Dec 27;2(6):1684-96 |
| 1 | J:225062 Chen SR, Zheng QS, Zhang Y, Gao F, Liu YX, Disruption of genital ridge development causes aberrant primordial germ cell proliferation but does not affect their directional migration. BMC Biol. 2013;11:22 |
| 1 | J:341966 Chen X, Song QL, Wang JY, Ji R, Cao ML, Guo DY, Zhang Y, Yang J, FKBP5 regulates trophoblast-macrophage crosstalk in recurrent spontaneous abortion through PI3K/AKT and NF-kappaB signaling pathways. Free Radic Biol Med. 2023 Oct 10;209(Pt 1):55-69 |
| 1* | J:276296 Chiba Y, He B, Yoshizaki K, Rhodes C, Ishijima M, Bleck CKE, Stempinski E, Chu EY, Nakamura T, Iwamoto T, de Vega S, Saito K, Fukumoto S, Yamada Y, The transcription factor AmeloD stimulates epithelial cell motility essential for tooth morphology. J Biol Chem. 2019 Mar 8;294(10):3406-3418 |
| 4* | J:272234 Chowdhury B, Xiang B, Liu M, Hemming R, Dolinsky VW, Triggs-Raine B, Hyaluronidase 2 Deficiency Causes Increased Mesenchymal Cells, Congenital Heart Defects, and Heart Failure. Circ Cardiovasc Genet. 2017 Jan;10(1) |
| 1 | J:301645 Cleal L, McHaffie SL, Lee M, Hastie N, Martinez-Estrada OM, Chau YY, Resolving the heterogeneity of diaphragmatic mesenchyme: a novel mouse model of congenital diaphragmatic hernia. Dis Model Mech. 2021 Jan 26;14(1) |
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| 1 | J:245870 Cotton JL, Li Q, Ma L, Park JS, Wang J, Ou J, Zhu LJ, Ip YT, Johnson RL, Mao J, YAP/TAZ and Hedgehog Coordinate Growth and Patterning in Gastrointestinal Mesenchyme. Dev Cell. 2017 Oct 09;43(1):35-47.e4 |
| 1 | J:170787 Cunningham CL, Martinez Cerdeno V, Navarro Porras E, Prakash AN, Angelastro JM, Willemsen R, Hagerman PJ, Pessah IN, Berman RF, Noctor SC, Premutation CGG-repeat expansion of the Fmr1 gene impairs mouse neocortical development. Hum Mol Genet. 2011 Jan 1;20(1):64-79 |
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| 3 | J:243698 Decaens T, Godard C, de Reynies A, Rickman DS, Tronche F, Couty JP, Perret C, Colnot S, Stabilization of beta-catenin affects mouse embryonic liver growth and hepatoblast fate. Hepatology. 2008 Jan;47(1):247-58 |
| 4 | J:241499 Del Toro D, Ruff T, Cederfjall E, Villalba A, Seyit-Bremer G, Borrell V, Klein R, Regulation of Cerebral Cortex Folding by Controlling Neuronal Migration via FLRT Adhesion Molecules. Cell. 2017 May 04;169(4):621-635.e16 |
| 1 | J:274882 Del-Pozo J, MacIntyre N, Azar A, Glover J, Milne E, Cheeseman M, Chronic otitis media is initiated by a bulla cavitation defect in the FBXO11 mouse model. Dis Model Mech. 2019 Mar 21;12(3):dmm038315 |
| 3 | J:227081 Delgado RN, Lim DA, Embryonic Nkx2.1-expressing neural precursor cells contribute to the regional heterogeneity of adult V-SVZ neural stem cells. Dev Biol. 2015 Nov 15;407(2):265-74 |
| 1 | J:181488 Delgado-Olguin P, Huang Y, Li X, Christodoulou D, Seidman CE, Seidman JG, Tarakhovsky A, Bruneau BG, Epigenetic repression of cardiac progenitor gene expression by Ezh2 is required for postnatal cardiac homeostasis. Nat Genet. 2012;44(3):343-7 |
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| 1 | J:353553 Despin-Guitard E, Rosa VS, Plunder S, Mathiah N, Van Schoor K, Nehme E, Merino-Aceituno S, Egea J, Shahbazi MN, Theveneau E, Migeotte I, Non-apical mitoses contribute to cell delamination during mouse gastrulation. Nat Commun. 2024 Aug 28;15(1):7364 |
| 2* | J:296362 Dhakal P, Kelleher AM, Behura SK, Spencer TE, Sexually dimorphic effects of forkhead box a2 (FOXA2) and uterine glands on decidualization and fetoplacental development. Proc Natl Acad Sci U S A. 2020 Sep 22;117(38):23952-23959 |
| 1 | J:154149 Di Bella A, Regoli M, Nicoletti C, Ermini L, Fonzi L, Bertelli E, An appraisal of intermediate filament expression in adult and developing pancreas: vimentin is expressed in alpha cells of rat and mouse embryos. J Histochem Cytochem. 2009 Jun;57(6):577-86 |
| 1 | J:310888 Di Domenico M, Jokwitz M, Witke W, Pilo Boyl P, Specificity and Redundancy of Profilin 1 and 2 Function in Brain Development and Neuronal Structure. Cells. 2021 Sep 3;10(9) |
| 1 | J:301004 Di Marco B, Crouch EE, Shah B, Duman C, Paredes MF, Ruiz de Almodovar C, Huang EJ, Alfonso J, Reciprocal Interaction between Vascular Filopodia and Neural Stem Cells Shapes Neurogenesis in the Ventral Telencephalon. Cell Rep. 2020 Oct 13;33(2):108256 |
| 2 | J:294824 Dias A, Lozovska A, Wymeersch FJ, Novoa A, Binagui-Casas A, Sobral D, Martins GG, Wilson V, Mallo M, A Tgfbr1/Snai1-dependent developmental module at the core of vertebrate axial elongation. Elife. 2020 Jun 29;9:e56615 |
| 1* | J:251273 Doroudgar S, Quijada P, Konstandin M, Ilves K, Broughton K, Khalafalla FG, Casillas A, Nguyen K, Gude N, Toko H, Ornelas L, Thuerauf DJ, Glembotski CC, Sussman MA, Volkers M, S100A4 protects the myocardium against ischemic stress. J Mol Cell Cardiol. 2016 Nov;100:54-63 |
| 1 | J:274335 Draganova K, Zemke M, Zurkirchen L, Valenta T, Cantu C, Okoniewski M, Schmid MT, Hoffmans R, Gotz M, Basler K, Sommer L, Wnt/beta-catenin signaling regulates sequential fate decisions of murine cortical precursor cells. Stem Cells. 2015 Jan;33(1):170-82 |
| 5 | J:207219 Driskell RR, Lichtenberger BM, Hoste E, Kretzschmar K, Simons BD, Charalambous M, Ferron SR, Herault Y, Pavlovic G, Ferguson-Smith AC, Watt FM, Distinct fibroblast lineages determine dermal architecture in skin development and repair. Nature. 2013 Dec 12;504(7479):277-81 |
| 1 | J:240858 Driver AM, Kratz LE, Kelley RI, Stottmann RW, Altered cholesterol biosynthesis causes precocious neurogenesis in the developing mouse forebrain. Neurobiol Dis. 2016 Jul;91:69-82 |
| 1 | J:268912 Ducharme P, Zarruk JG, David S, Paquin J, The ferroxidase ceruloplasmin influences Reelin processing, cofilin phosphorylation and neuronal organization in the developing brain. Mol Cell Neurosci. 2018 Oct;92:104-113 |
| 2 | J:257440 Dvoriantchikova G, Tao W, Pappas S, Gaidosh G, Tse DT, Ivanov D, Pelaez D, Molecular Profiling of the Developing Lacrimal Gland Reveals Putative Role of Notch Signaling in Branching Morphogenesis. Invest Ophthalmol Vis Sci. 2017 Feb 1;58(2):1098-1109 |
| 1 | J:95876 Englund C, Fink A, Lau C, Pham D, Daza RA, Bulfone A, Kowalczyk T, Hevner RF, Pax6, Tbr2, and Tbr1 are expressed sequentially by radial glia, intermediate progenitor cells, and postmitotic neurons in developing neocortex. J Neurosci. 2005 Jan 5;25(1):247-51 |
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