Comparative GO Graph (mouse, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes
  • Mouse genes 1700009N14Rik
  • Rat genes RGD1306195
  • Zfish genes ran
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set 1700009N14Rik

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	ran	IPI	ZFIN:ZDB-GENE-040426-1087	Zfish	PMID:26864484
Molecular Function	GO:0019904	protein domain specific binding	1700009N14Rik	IPI	PR:Q0KK55	Mouse	PMID:17984326
Biological Process	GO:0003407	neural retina development	ran	IMP	ZFIN:ZDB-MRPHLNO-160425-1	Zfish	PMID:26864484
Biological Process	GO:0060041	retina development in camera-type eye	ran	IMP	ZFIN:ZDB-MRPHLNO-160425-2	Zfish	PMID:26864484
Biological Process	GO:0060041	retina development in camera-type eye	ran	IMP	ZFIN:ZDB-GENO-200122-4	Zfish	PMID:30624971
Biological Process	GO:0060041	retina development in camera-type eye	ran	IMP	ZFIN:ZDB-MRPHLNO-160425-1	Zfish	PMID:26864484

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern