Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes AMIGO3
  • Mouse genes Amigo3
  • Rat genes Amigo3
  • Zfish genes amigo3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Amigo3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	Amigo3	IPI	RGD:1303079|RGD:727911	Rat	PMID:12629050|RGD:634626
Molecular Function	GO:0005515	protein binding	Amigo3	IPI	UniProtKB:Q7TNJ4	Rat	PMID:12629050|RGD:634626
Molecular Function	GO:0005515	protein binding	Amigo3	IPI	UniProtKB:Q80ZD7	Rat	PMID:12629050|RGD:634626
Molecular Function	GO:0044877	protein-containing complex binding	Amigo3	IPI	RGD:620810|RGD:3177	Rat	PMID:23613963|RGD:14390159
Biological Process	GO:0007157	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Amigo3	IPI	UniProtKB:Q7TNJ4	Rat	PMID:12629050|RGD:634626
Biological Process	GO:0007157	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Amigo3	IPI	UniProtKB:Q80ZD7	Rat	PMID:12629050|RGD:634626
Biological Process	GO:0010977	negative regulation of neuron projection development	Amigo3	IMP		Rat	PMID:23613963|RGD:14390159
Biological Process	GO:0007399	nervous system development	Amigo3	IDA		Rat	PMID:12629050|RGD:634626
Biological Process	GO:0051965	positive regulation of synapse assembly	Amigo3	IDA		Mouse	PMID:24613359

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern