Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Arf1

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes ARF1
- Mouse genes Arf1
- Rat genes Arf1
- Zfish genes arf1
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Arf1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0019003	GDP binding	Arf1	IDA		Rat	PMID:7552752\|RGD:9684957
Molecular Function	GO:0005525	GTP binding	Arf1	IMP		Mouse	MGI:MGI:3693393\|PMID:12679809
Molecular Function	GO:0005525	GTP binding	Arf1	IDA		Rat	PMID:7552752\|RGD:9684957
Molecular Function	GO:0000287	magnesium ion binding	Arf1	IMP		Mouse	MGI:MGI:3693393\|PMID:12679809
Molecular Function	GO:0000287	magnesium ion binding	Arf1	IDA		Rat	PMID:7552752\|RGD:9684957
Molecular Function	GO:1990583	phospholipase D activator activity	Arf1	IDA		Rat	PMID:7972129\|RGD:9685186
Molecular Function	GO:0005515	protein binding	ARF1	IPI	UniProtKB:Q99418	Human	PMID:10198630
Molecular Function	GO:0005515	protein binding	ARF1	IPI	UniProtKB:Q9UJY5	Human	PMID:12668765
Molecular Function	GO:0005515	protein binding	ARF1	IPI	UniProtKB:Q99418	Human	PMID:14654833
Molecular Function	GO:0005515	protein binding	ARF1	IPI	UniProtKB:Q99418	Human	PMID:17563369
Molecular Function	GO:0005515	protein binding	ARF1	IPI	UniProtKB:Q92538	Human	PMID:17956946
Molecular Function	GO:0005515	protein binding	ARF1	IPI	UniProtKB:O60271	Human	PMID:19644450
Molecular Function	GO:0005515	protein binding	ARF1	IPI	UniProtKB:P53367	Human	PMID:22981988
Molecular Function	GO:0005515	protein binding	Arf1	IPI	UniProtKB:Q5T5U3	Mouse	MGI:MGI:5508606\|PMID:17347647
Molecular Function	GO:0005515	protein binding	Arf1	IPI	UniProtKB:Q9UJY5	Mouse	MGI:MGI:3693393\|PMID:12679809
Molecular Function	GO:0005515	protein binding	Arf1	IPI	RGD:69437	Rat	PMID:23889934\|RGD:8553918
Molecular Function	GO:0019904	protein domain specific binding	ARF1	IMP		Human	PMID:12668765
Molecular Function	GO:0003723	RNA binding	ARF1	HDA		Human	PMID:22681889
Cellular Component	GO:0031252	cell leading edge	ARF1	IDA		Human	PMID:22573891
Cellular Component	GO:0030137	COPI-coated vesicle	Arf1	IDA		Rat	PMID:8496147\|RGD:9684998
Cellular Component	GO:0005829	cytosol	Arf1	IDA		Mouse	PMID:14728599
Cellular Component	GO:0005829	cytosol	Arf1	IDA		Rat	PMID:9721194\|RGD:9684951
Cellular Component	GO:0012505	endomembrane system	Arf1	IDA		Mouse	PMID:14728599
Cellular Component	GO:0070062	extracellular exosome	ARF1	HDA		Human	PMID:19199708
Cellular Component	GO:0070062	extracellular exosome	ARF1	HDA		Human	PMID:20458337
Cellular Component	GO:0070062	extracellular exosome	ARF1	HDA		Human	PMID:23533145
Cellular Component	GO:0005925	focal adhesion	ARF1	HDA		Human	PMID:21423176
Cellular Component	GO:0098978	glutamatergic synapse	Arf1	IDA		Rat	PMID:23889934\|RGD:8553918
Cellular Component	GO:0098978	glutamatergic synapse	Arf1	IMP		Rat	PMID:23889934\|RGD:8553918
Cellular Component	GO:0005794	Golgi apparatus	Arf1	IDA		Mouse	PMID:11092755
Cellular Component	GO:0005794	Golgi apparatus	Arf1	IDA		Mouse	PMID:8947846
Cellular Component	GO:0000139	Golgi membrane	Arf1	IDA		Rat	PMID:8496147\|RGD:9684998
Cellular Component	GO:0005770	late endosome	Arf1	IDA		Rat	PMID:21421027\|RGD:9684860
Cellular Component	GO:0005778	peroxisomal membrane	Arf1	IDA		Rat	PMID:16100119\|RGD:9684997
Cellular Component	GO:0014069	postsynaptic density	Arf1	IDA		Rat	PMID:23889934\|RGD:8553918
Cellular Component	GO:0014069	postsynaptic density	Arf1	IMP		Rat	PMID:23889934\|RGD:8553918
Cellular Component	GO:0032991	protein-containing complex	ARF1	IMP		Human	PMID:12668765
Cellular Component	GO:0032991	protein-containing complex	Arf1	IMP		Mouse	MGI:MGI:3693393\|PMID:12679809
Cellular Component	GO:0030017	sarcomere	Arf1	IDA		Mouse	PMID:14728599
Cellular Component	GO:0005802	trans-Golgi network	Arf1	IDA		Rat	PMID:14684384\|RGD:9684958
Biological Process	GO:0007015	actin filament organization	Arf1	IMP		Rat	PMID:23889934\|RGD:8553918
Biological Process	GO:0098586	cellular response to virus	ARF1	IMP		Human	PMID:28389568
Biological Process	GO:0097061	dendritic spine organization	Arf1	IMP		Rat	PMID:23889934\|RGD:8553918
Biological Process	GO:0055108	Golgi to transport vesicle transport	Arf1	IDA		Rat	PMID:8978816\|RGD:9684858
Biological Process	GO:0006878	intracellular copper ion homeostasis	ARF1	IMP		Human	PMID:21034850
Biological Process	GO:0060292	long-term synaptic depression	Arf1	IDA		Rat	PMID:23889934\|RGD:8553918
Biological Process	GO:0097212	lysosomal membrane organization	Arf1	IDA		Rat	PMID:9538255\|RGD:9684948
Biological Process	GO:1990386	mitotic cleavage furrow ingression	Arf1	IGI	UniProtKB:P61209	Mouse	MGI:MGI:5883148\|PMID:27535433
Biological Process	GO:0045956	positive regulation of calcium ion-dependent exocytosis	Arf1	IDA		Rat	PMID:10657240\|RGD:9684853
Biological Process	GO:0060999	positive regulation of dendritic spine development	Arf1	IMP		Rat	PMID:23889934\|RGD:8553918
Biological Process	GO:0045807	positive regulation of endocytosis	Arf1	IMP		Rat	PMID:8294513\|RGD:9684859
Biological Process	GO:1902953	positive regulation of ER to Golgi vesicle-mediated transport	Arf1	IMP		Rat	PMID:15618550\|RGD:9684856
Biological Process	GO:1902824	positive regulation of late endosome to lysosome transport	Arf1	IMP		Rat	PMID:21421027\|RGD:9684860
Biological Process	GO:0050714	positive regulation of protein secretion	Arf1	IMP		Rat	PMID:8294513\|RGD:9684859
Biological Process	GO:1902307	positive regulation of sodium ion transmembrane transport	Arf1	IMP		Rat	PMID:14563210\|RGD:1302324
Biological Process	GO:0098974	postsynaptic actin cytoskeleton organization	Arf1	IDA		Rat	PMID:23889934\|RGD:8553918
Biological Process	GO:0098974	postsynaptic actin cytoskeleton organization	Arf1	IMP		Rat	PMID:23889934\|RGD:8553918
Biological Process	GO:0034315	regulation of Arp2/3 complex-mediated actin nucleation	Arf1	IDA		Rat	PMID:23889934\|RGD:8553918
Biological Process	GO:1903725	regulation of phospholipid metabolic process	Arf1	IDA		Rat	PMID:10657240\|RGD:9684853
Biological Process	GO:0002090	regulation of receptor internalization	Arf1	IDA		Rat	PMID:23889934\|RGD:8553918
Biological Process	GO:0060872	semicircular canal development	arf1	IMP	ZFIN:ZDB-MRPHLNO-090818-4	Zfish	PMID:19320994
Biological Process	GO:0060872	semicircular canal development	arf1	IGI	ZFIN:ZDB-MRPHLNO-050930-1,ZFIN:ZDB-MRPHLNO-090818-5	Zfish	PMID:19320994
Biological Process	GO:0060872	semicircular canal development	arf1	IGI	ZFIN:ZDB-MRPHLNO-090818-5,ZFIN:ZDB-MRPHLNO-090818-6	Zfish	PMID:19320994
Biological Process	GO:0060872	semicircular canal development	arf1	IMP	ZFIN:ZDB-MRPHLNO-090818-5	Zfish	PMID:19320994
Biological Process	GO:0070142	synaptic vesicle budding	Arf1	IMP		Rat	PMID:9590176\|RGD:9684955
Biological Process	GO:0034379	very-low-density lipoprotein particle assembly	Arf1	IMP		Rat	PMID:15618550\|RGD:9684856
Biological Process	GO:0016192	vesicle-mediated transport	Arf1	IDA		Mouse	PMID:14728599

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/12/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.