Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Asl

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes ASL
- Mouse genes Asl
- Rat genes Asl
- Zfish genes asl
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Asl

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0004056	argininosuccinate lyase activity	ASL	IDA		Human	PMID:11747432
Molecular Function	GO:0004056	argininosuccinate lyase activity	ASL	IDA		Human	PMID:11747433
Molecular Function	GO:0004056	argininosuccinate lyase activity	ASL	IDA		Human	PMID:9045711
Molecular Function	GO:0004056	argininosuccinate lyase activity	Asl	IDA		Rat	PMID:4062872\|RGD:2300098
Molecular Function	GO:0004056	argininosuccinate lyase activity	Asl	IDA		Rat	PMID:8586639\|RGD:1599287
Molecular Function	GO:0042802	identical protein binding	ASL	IPI	UniProtKB:P04424	Human	PMID:21988832
Molecular Function	GO:0042802	identical protein binding	ASL	IPI	UniProtKB:P04424	Human	PMID:25416956
Molecular Function	GO:0042802	identical protein binding	ASL	IPI	UniProtKB:P04424	Human	PMID:25502805
Molecular Function	GO:0042802	identical protein binding	ASL	IPI	UniProtKB:P04424	Human	PMID:31515488
Molecular Function	GO:0042802	identical protein binding	ASL	IPI	UniProtKB:P04424	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	ASL	IPI	UniProtKB:Q96HA8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	ASL	IPI	UniProtKB:Q9BTE3-2	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	ASL	IPI	UniProtKB:Q96HA8	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	ASL	IPI	UniProtKB:O75382	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	ASL	IPI	UniProtKB:Q96HA8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	ASL	IPI	UniProtKB:Q9BTE3-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Asl	IPI	UniProtKB:P16460	Mouse	MGI:MGI:5305859\|PMID:22081021
Cellular Component	GO:0070852	cell body fiber	Asl	IDA		Rat	PMID:12445581\|RGD:4139895
Cellular Component	GO:0005737	cytoplasm	Asl	IDA		Rat	PMID:8867809\|RGD:1599270
Cellular Component	GO:0005783	endoplasmic reticulum	Asl	IDA		Rat	PMID:8867809\|RGD:1599270
Cellular Component	GO:0070062	extracellular exosome	ASL	HDA		Human	PMID:19056867
Cellular Component	GO:0005741	mitochondrial outer membrane	Asl	IDA		Rat	PMID:8867809\|RGD:1599270
Cellular Component	GO:0043025	neuronal cell body	Asl	IDA		Rat	PMID:12445581\|RGD:4139895
Cellular Component	GO:0005634	nucleus	Asl	IDA		Rat	PMID:17900569\|RGD:4110827
Cellular Component	GO:0043204	perikaryon	Asl	IDA		Rat	PMID:17900569\|RGD:4110827
Cellular Component	GO:0048471	perinuclear region of cytoplasm	Asl	IDA		Rat	PMID:15199240\|RGD:4139894
Biological Process	GO:0007568	aging	Asl	IEP		Rat	PMID:12044965\|RGD:4140929
Biological Process	GO:0006520	amino acid metabolic process	Asl	IMP	MGI:MGI:3604881	Mouse	PMID:12559843
Biological Process	GO:0019676	ammonia assimilation cycle	Asl	IMP	MGI:MGI:3604881	Mouse	PMID:12559843
Biological Process	GO:0006526	arginine biosynthetic process	ASL	IDA		Human	PMID:11747432
Biological Process	GO:0006526	arginine biosynthetic process	ASL	IDA		Human	PMID:11747433
Biological Process	GO:0006526	arginine biosynthetic process	Asl	IMP		Mouse	MGI:MGI:5305859\|PMID:22081021
Biological Process	GO:0006525	arginine metabolic process	ASL	IDA		Human	PMID:9045711
Biological Process	GO:0000053	argininosuccinate metabolic process	Asl	IDA		Rat	PMID:4062872\|RGD:2300098
Biological Process	GO:0000053	argininosuccinate metabolic process	Asl	IDA		Rat	PMID:8586639\|RGD:1599287
Biological Process	GO:0071242	cellular response to ammonium ion	Asl	IEP		Rat	PMID:10353334\|RGD:1599267
Biological Process	GO:0071320	cellular response to cAMP	Asl	IEP		Rat	PMID:11097477\|RGD:1599264
Biological Process	GO:0071549	cellular response to dexamethasone stimulus	Asl	IEP		Rat	PMID:8923475\|RGD:1599316
Biological Process	GO:0071377	cellular response to glucagon stimulus	Asl	IEP		Rat	PMID:8387274\|RGD:1599288
Biological Process	GO:0071385	cellular response to glucocorticoid stimulus	Asl	IEP		Rat	PMID:11097477\|RGD:1599264
Biological Process	GO:0071456	cellular response to hypoxia	Asl	IEP		Rat	PMID:11097477\|RGD:1599264
Biological Process	GO:0071356	cellular response to tumor necrosis factor	Asl	IEP		Rat	PMID:11072090\|RGD:4139899
Biological Process	GO:0071346	cellular response to type II interferon	Asl	IEP		Rat	PMID:11072090\|RGD:4139899
Biological Process	GO:0060539	diaphragm development	Asl	IEP		Rat	PMID:9618389\|RGD:4139909
Biological Process	GO:0001822	kidney development	Asl	IEP		Rat	PMID:10473900\|RGD:1599266
Biological Process	GO:0001889	liver development	Asl	IEP		Rat	PMID:10473900\|RGD:1599266
Biological Process	GO:0001889	liver development	Asl	IDA		Rat	PMID:9535537\|RGD:1599268
Biological Process	GO:0007626	locomotory behavior	Asl	IMP	MGI:MGI:3604881	Mouse	PMID:12559843
Biological Process	GO:0007494	midgut development	Asl	IEP		Rat	PMID:9544996\|RGD:4139911
Biological Process	GO:0045429	positive regulation of nitric oxide biosynthetic process	ASL	IMP		Human	PMID:22081021
Biological Process	GO:0045429	positive regulation of nitric oxide biosynthetic process	Asl	IMP		Mouse	MGI:MGI:5305859\|PMID:22081021
Biological Process	GO:0009791	post-embryonic development	Asl	IMP	MGI:MGI:3604881	Mouse	PMID:12559843
Biological Process	GO:0014075	response to amine	Asl	IEP		Rat	PMID:16168957\|RGD:4110830
Biological Process	GO:0060416	response to growth hormone	Asl	IEP		Rat	PMID:9688877\|RGD:1599313
Biological Process	GO:0032496	response to lipopolysaccharide	Asl	IEP		Rat	PMID:10652239\|RGD:1599265
Biological Process	GO:0032496	response to lipopolysaccharide	Asl	IEP		Rat	PMID:8576237\|RGD:4140434
Biological Process	GO:0007584	response to nutrient	Asl	IEP		Rat	PMID:2547341\|RGD:1599290
Biological Process	GO:0043434	response to peptide hormone	Asl	IEP		Rat	PMID:8387274\|RGD:1599288
Biological Process	GO:0048545	response to steroid hormone	Asl	IEP		Rat	PMID:9688877\|RGD:1599313
Biological Process	GO:0009636	response to toxic substance	Asl	IEP		Rat	PMID:20452409\|RGD:4110826
Biological Process	GO:0009410	response to xenobiotic stimulus	Asl	IEP		Rat	PMID:9535537\|RGD:1599268
Biological Process	GO:0010043	response to zinc ion	Asl	IEP		Rat	PMID:11686772\|RGD:4140931
Biological Process	GO:0000050	urea cycle	Asl	IDA		Rat	PMID:4062872\|RGD:2300098

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/17/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.